Publikationen von J. Cox

Geiger, T.; Madden, S. F.; Gallagher, W. M.; Cox, J.; Mann, M.: Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers. Cancer Research 72 (9), S. 2428 - 2439 (2012)

Geiger, T.; Wehner, A.; Schaab, C.; Cox, J.; Mann, M.: Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins. Special Issue: Prospects in Space and Time, M111.014050, S. [1] - [11] (2012)

Schaab, C.; Geiger, T.; Stoehr, G.; Cox, J.; Mann, M.: Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database. Special Issue: Prospects in Space and Time, M111.014068, S. [1] - [10] (2012)

Sharma, K.; Vabulas, R. M.; Macek, B.; Pinkert, S.; Cox, J.; Mann, M.; Hartl, F. U.: Quantitative Proteomics Reveals That Hsp90 Inhibition Preferentially Targets Kinases and the DNA Damage Response. Special Issue: Prospects in Space and Time, M111.014654, S. [1] - [12] (2011)

Michalski, A.; Damoc, E.; Lange, O.; Denisov, E.; Nolting, D.; Mueller, M.; Viner, R.; Schwartz, J.; Remes, P.; Belford, M. et al.; Dunyach, J. J.; Cox, J.; Horning, S.; Mann, M.; Makarov, A.: Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes. Special Issue: Prospects in Space and Time, O111.013698, S. [1] - [11] (2011)

Graumann, J.; Scheltema, R. A.; Zhang, Y.; Cox, J.; Mann, M.: A Framework for Intelligent Data Acquisition and Real-Time Database Searching for Shotgun Proteomics. Special Issue: Prospects in Space and Time, M111.013185, S. [1] - [11] (2011)

Cox, J.; Heeren, R. M. A.; James, P.; Jorrin-Novo, J. V.; Kolker, E.; Levander, F.; Morrice, N.; Picotti, P.; Righetti, P. G.; Sanchez, J. C. et al.; Turck, C. W.; Zubarev, R.; Alexandre, B. M.; Corrales, F. J.; Marko-Varga, G.; O'Donovan, S.; O'Neil, S.; Prechl, J.; Simoes, T.; Weckwerth, W.; Penque, D.: Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010. Journal of Proteomics 75 (1 Sp. Iss.), S. 4 - 17 (2011)

Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Pääbo, S.; Mann, M.: Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology 7, 548, S. [1] - [8] (2011)

Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhauser, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M.: System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap. Molecular & Cellular Proteomics (Special Issue: Prospects in Space and Time) 11 (3), M111.013722, S. [1] - [11] (2011)

Wagner, S. A.; Beli, P.; Weinert, B. T.; Nielsen, M. L.; Cox, J.; Mann, M.; Choudhary, C.: A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles. Molecular & Cellular Proteomics 10 (10), M111.013284, S. [1] - [13] (2011)

Michalski, A.; Damoc, E.; Hauschild, J. P.; Lange, O.; Wieghaus, A.; Makarov, A.; Nagaraj, N.; Cox, J.; Mann, M.; Horning, S.: Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer. Molecular & Cellular Proteomics 10 (9), M111.011015, S. [1] - [11] (2011)

Cox, J.; Michalski, A.; Mann, M.: Software Lock Mass by Two-Dimensional Minimization of Peptide Mass Errors. Journal of the American Society for Mass Spectrometry 22 (8), S. 1373 - 1380 (2011)

Thakur, S. S.; Geiger, T.; Chatterjee, B.; Bandilla, P.; Fröhlich, F.; Cox, J.; Mann, M.: Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation. Molecular & Cellular Proteomics 10 (8), M110.003699, S. [1] - [9] (2011)

Cox, J.; Neuhauser, N.; Michalski, A.; Scheltema, R. A.; Olsen, J. V.; Mann, M.: Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 10 (4), S. 1794 - 1805 (2011)

Michalski, A.; Cox, J.; Mann, M.: More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS. Journal of Proteome Research 10 (4), S. 1785 - 1793 (2011)

Geiger, T.; Wisniewski, J. R.; Cox, J.; Zanivan, S.; Kruger, M.; Ishihama, Y.; Mann, M.: Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nature Protocols 6 (2), S. 147 - 157 (2011)

Lundberg, E.; Fagerberg, L.; Klevebring, D.; Matic, I.; Geiger, T.; Cox, J.; Älgenäs, C.; Lundeberg, J.; Mann, M.; Uhlen, M.: Defining the transcriptome and proteome in three functionally different human cell lines. Molecular Systems Biology 6, 450, S. [1] - [9] (2010)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation. Journal of Proteome Research 9 (12), S. 6786 - 6794 (2010)

Geiger, T.; Cox, J.; Mann, M.: Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation. Molecular & Cellular Proteomics 9 (10), S. 2252 - 2261 (2010)

Geiger, T.; Cox, J.; Mann, M.: Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells. PLoS Genetics 6 (9), e1001090, S. [1] - [11] (2010)