Publikationen von Juergen Cox

Deeb, S. J.; Cox, J.; Schmidt-Supprian, M.; Mann, M.: N-linked Glycosylation Enrichment for In-depth Cell Surface Proteomics of Diffuse Large B-cell Lymphoma Subtypes. MOLECULAR & CELLULAR PROTEOMICS 13 (1), S. 240 - 251 (2014)

Robles, M. S.; Cox, J.; Mann, M.: In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism. PLOS GENETICS 10 (1), e1004047 (2014)

Sharma, K.; D'Souza, R. C. J.; Tyanova, S.; Schaab, C.; Wisniewski, J. R.; Cox, J.; Mann, M.: Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling. CELL REPORTS 8 (5), S. 1583 - 1594 (2014)

Wisniewski, J. R.; Hein, M. Y.; Cox, J.; Mann, M.: A "Proteomic Ruler" for Protein Copy Number and Concentration Estimation without Spike-in Standards. Molecular & cellular proteomics: MCP 13 (12), S. 3497 - 3506 (2014)

Oppermann, F. S.; Klammer, M.; Bobe, C.; Cox, J.; Schaab, C.; Tebbe, A.; Daub, H.: Comparison of SILAC and mTRAQ Quantification for Phosphoproteomics on a Quadrupole Orbitrap Mass Spectrometer. JOURNAL OF PROTEOME RESEARCH 12 (9), S. 4089 - 4100 (2013)

Geiger, T.; Velic, A.; Macek, B.; Lundberg, E.; Kampf, C.; Nagaraj, N.; Uhlen, M.; Cox, J.; Mann, M.: Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse. MOLECULAR & CELLULAR PROTEOMICS 12 (6), S. 1709 - 1722 (2013)

Marx, H.; Lemeer, S.; Schliep, J. E.; Matheron, L.; Mohammed, S.; Cox, J.; Mann, M.; Heck, A. J. R.; Kuster, B.: A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics. NATURE BIOTECHNOLOGY 31 (6), S. 557 - 564 (2013)

Neuhauser, N.; Nagaraj, N.; McHardy, P.; Zanivan, S.; Scheltema, R.; Cox, J.; Mann, M.: High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome. JOURNAL OF PROTEOME RESEARCH 12 (6), S. 2858 - 2868 (2013)

Mann, M.; Kulak, N. A.; Nagaraj, N.; Cox, J.: The Coming Age of Complete, Accurate, and Ubiquitous Proteomes. MOLECULAR CELL 49 (4), S. 583 - 590 (2013)

Zanivan, S.; Meves, A.; Behrendt, K.; Schoof, E. M.; Neilson, L. J.; Cox, J.; Tang, H. R.; Kalna, G.; van Ree, J. H.; van Deursen, J. M. et al.; Trempus, C. S.; Machesky, L. M.; Linding, R.; Wickstroem, S. A.; Faessler, R.; Mann, M.: In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. CELL REPORTS 3 (2), S. 552 - 566 (2013)

Perez-Riverol, Y.; Hermjakob, H.; Kohlbacher, O.; Martens, L.; Creasy, D.; Cox, J.; Leprevost, F.; Shan, B. P.; Perez-Nueno, V. I.; Blazejczyk, M. et al.; Punta, M.; Vierlinger, K.; Valienten, P. A.; Leon, K.; Chinea, G.; Guirola, O.; Bringas, R.; Cabrera, G.; Guillen, G.; Padron, G.; Javier Gonzalez, L.; Besada, V.: Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report. JOURNAL OF PROTEOMICS 87, S. 134 - 138 (2013)

Tyanova, S.; Cox, J.; Olsen, J.; Mann, M.; Frishman, D.: Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins. PLOS COMPUTATIONAL BIOLOGY 9 (1), e1002842 (2013)

Cox, J.; Mann, M.: 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data. BMC BIOINFORMATICS 13 (Suppl. 16), S12 (2012)

Michalski, A.; Neuhauser, N.; Cox, J.; Mann, M.: A Systematic Investigation into the Nature of Tryptic HCD Spectra. JOURNAL OF PROTEOME RESEARCH 11 (11), S. 5479 - 5491 (2012)

Neuhauser, N.; Michalski, A.; Cox, J.; Mann, M.: Expert System for Computer-assisted Annotation of MS/MS Spectra. MOLECULAR & CELLULAR PROTEOMICS 11 (11), S. 1500 - 1509 (2012)

Stingele, S.; Stoehr, G.; Peplowska, K.; Cox, J.; Mann, M.; Storchova, Z.: Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells. Molecular Systems Biology 8, 608, S. [1] - [12] (2012)

Bennetzen, M. V.; Cox, J.; Mann, M.; Andersen, J. S.: PhosphoSiteAnalyzer: A Bioinformatic Platform for Deciphering Phospho Proteomes Using Kinase Predictions Retrieved from NetworKIN. Journal of Proteome Research 11 (6), S. 3480 - 3486 (2012)

Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation (vol 9, pg 6786, 2010). JOURNAL OF PROTEOME RESEARCH 11 (6), S. 3506 - 3508 (2012)

Deeb, S. J.; D'Souza, R. C. J.; Cox, J.; Schmidt-Supprian, M.; Mann, M.: Super-SILAC Allows Classification of Diffuse Large B-cell Lymphoma Subtypes by Their Protein Expression Profiles. MOLECULAR & CELLULAR PROTEOMICS 11 (5), S. 77 - 89 (2012)

Geiger, T.; Madden, S. F.; Gallagher, W. M.; Cox, J.; Mann, M.: Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers. Cancer Research 72 (9), S. 2428 - 2439 (2012)