Publikationen von Jürgen Cox

Bassani-Sternberg, M.; Braunlein, E.; Klar, R.; Engleitner, T.; Sinitcyn, P.; Audehm, S.; Straub, M.; Weber, J.; Slotta-Huspenina, J.; Specht, K. et al.; Martignoni, M. E.; Werner, A.; Hein, R.; Busch, D. H.; Peschel, C.; Rad, R.; Cox, J.; Mann, M.; Krackhardt, A. M.: Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry. Nature Communications 7, 13404 (2016)

Sacco, F.; Humphrey, S. J.; Cox, J.; Mischnik, M.; Schulte, A.; Klabunde, T.; Schaefer, M.; Mann, M.: Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion. Nature Communications 7, 13250 (2016)

Chen, Z. A.; Fischer, L.; Cox, J.; Rappsilber, J.: Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant. Molecular and Cellular Proteomics 15 (8), S. 2769 - 2778 (2016)

Itzhak, D. N.; Tyanova, S.; Cox, J.; Borner, G. H. H.: Global, quantitative and dynamic mapping of protein subcellular localization. eLife 5, e16950 (2016)

Grassl, N.; Kulak, N. A.; Pichler, G.; Geyer, P. E.; Jung, J.; Schubert, S.; Sinitcyn, P.; Cox, J.; Mann, M.: Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. GENOME MEDICINE 8, 44 (2016)

Iglesias-Gato, D.; Wikström, P.; Tyanova, S.; Lavallee, C.; Thysell, E.; Carlsson, J.; Hägglöf, C.; Cox, J.; Andren, O.; Stattin, P. et al.; Egevad, L.; Widmark, A.; Bjartell, A.; Collins, C. C.; Bergh, A.; Geiger, T.; Mann, M.; Flores-Morales, A.: The Proteome of Primary Prostate Cancer. EUROPEAN UROLOGY 69 (5), S. 942 - 952 (2016)

Mischnik, M.; Sacco, F.; Cox, J.; Schneider, H.-C.; Schäfer, M.; Hendlich, M.; Crowther, D.; Mann, M.; Klabunde, T.: IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data. BIOINFORMATICS 32 (3), S. 424 - 431 (2016)

Temu, T.; Mann, M.; Räschle, M.; Cox, J.: Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry. Bioinformatics 32 (9), S. 1417 - 1419 (2016)

Tyanova, S.; Albrechtsen, R.; Kronqvist, P.; Cox, J.; Mann, M.; Geiger, T.: Proteomic maps of breast cancer subtypes. NATURE COMMUNICATIONS 7, 10259 (2016)

Tyanova, S.; Temu, T.; Cox, J.: The MaxQuant computational platform for mass spectrometry-based shotgun proteomics. Nature Protocols 11 (12), S. 2301 - 2319 (2016)

Tyanova, S.; Temu, T.; Sinitcyn, P.; Carlson, A.; Hein, M. Y.; Geiger, T.; Mann, M.; Cox, J.: The Perseus computational platform for comprehensive analysis of (prote)omics data. Nature methods 13 (9), S. 731 - 740 (2016)

Beck, S.; Michalski, A.; Raether, O.; Lubeck, M.; Kaspar, S.; Goedecke, N.; Baessmann, C.; Hornburg, D.; Meier, F.; Paron, I. et al.; Kulak, N. A.; Cox, J.; Mann, M.: The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics. MOLECULAR & CELLULAR PROTEOMICS 14 (7), S. 2014 - 2029 (2015)

Deeb, S. J.; Tyanova, S.; Hummel, M.; Schmidt-Supprian, M.; Cox, J.; Mann, M.: Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles. MOLECULAR & CELLULAR PROTEOMICS 14 (11), S. 2947 - 2960 (2015)

Deshmukh, A. S.; Cox, J.; Jensen , L. J.; Meissner, F.; Mann, M.: Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow. JOURNAL OF PROTEOME RESEARCH 14 (11), S. 4885 - 4895 (2015)

Deshmukh, A. S.; Murgia, M.; Nagaraj, N.; Treebak, J. T.; Cox, J.; Mann, M.: Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors. MOLECULAR & CELLULAR PROTEOMICS 14 (4), S. 841 - 853 (2015)

Hein, M. Y.; Hubner, N. C.; Poser, I.; Cox, J.; Nagaraj, N.; Toyoda, Y.; Gak, I. A.; Weisswange, I.; Mansfeld, J.; Buchholz, F. et al.; Hyman, A. A.; Mann, M.: A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances. CELL 163 (3), S. 712 - 723 (2015)

Räschle, M.; Smeenk, G.; Hansen, R. K.; Temu, T.; Oka, Y.; Hein, M. Y.; Nagaraj, N.; Long, D. T.; Walter, J. C.; Hofmann, K. et al.; Storchova, Z.; Cox, J.; Bekker-Jensen, S.; Mailand, N.; Mann, M.: Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links. SCIENCE 348 (6234), 1253671 (2015)

Schölz, C.; Weinert, B. T.; Wagner, S. A.; Beli, P.; Miyake, Y.; Qi, J.; Jensen, L. J.; Streicher, W.; McCarthy, A. R.; Westwood, N. J. et al.; Lain, S.; Cox, J.; Matthias, P.; Mann, M.; Bradner, J. E.; Choudhary, C.: Acetylation site specificities of lysine deacetylase inhibitors in human cells. NATURE BIOTECHNOLOGY 33 (4), S. 415 - 423 (2015)

Tyanova, S.; Temu, T.; Carlson, A.; Sinitcyn, P.; Mann, M.; Cox, J.: Visualization of LC-MS/MS proteomics data in MaxQuant. PROTEOMICS 15 (8), S. 1453 - 1456 (2015)

Griss, J.; Jones, A. R.; Sachsenberg, T.; Walzer, M.; Gatto, L.; Hartler, J.; Thallinger, G. G.; Salek, R. M.; Steinbeck, C.; Neuhauser, N. et al.; Cox, J.; Neumann, S.; Fan, J.; Reisinger, F.; Xu, Q.-W.; del Toro, N.; Perez-Riverol, Y.; Ghali, F.; Bandeira, N.; Xenarios, I.; Kohlbacher, O.; Vizcaino, J. A.; Hermjakob, H.: The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience. MOLECULAR & CELLULAR PROTEOMICS 13 (10), S. 2765 - 2775 (2014)