Publications

Publications

Behrens A., Rodschinka G., Nedialkova D.D. 2021. "High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq". Molecular Cell. Full text 

Blasco-Moreno B.*de Campos-Mata L.*, Böttcher R., García Martínez J., Jungfleisch J., Nedialkova D.D., Chattopadhyay S., Gas M.-E., Oliva B., Pérez-Ortín J.E., Leidel S.A., Choder M., Diez J. 2019. “The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins”. Nature Commun. 10(1):1298. *Equal contribution. Full text

Mittal N., Guimaraes J., Gross T., Schmidt A., Vina-Vilaseca A., Nedialkova D.D., Aeschimann F., Leidel S.A., Spang A., Zavolan M. 2017. "The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan". Nature Commun. 8(1):457. Full text

Jungfleisch  J., Nedialkova D.D.*, Dotu I.*, Sloan K.E., Bruening L., Raineri E., Bohnsack M., Leidel S.A., Diez J. 2017. “A novel and conserved translational control mechanism involving RNA structures within coding sequences“. Genome Res 27(1):95-106. *Equal contribution. Full text

Lecanda A., Nilges B.S., Sharma P., Nedialkova D.D., Schwarz J., Vaquerizas J.M., Leidel S.A. 2016. “Dual randomization of oligonucleotides to reduce the bias in ribosome profiling libraries”. Methods 107: 89-97. Full text

Laguesse S.*, Creppe C.*, Nedialkova D.D., Prévot P.-P., Borgs L., Huysseune S., Franco B., Duysens G., Krusy N., Lee G., Thelen N., Thiry M., Close P., Chariot A., Malgrange B., Leidel S.A., Godin J.D., Nguyen L. 2015. “A dynamic unfolded protein response contributes to the control of cortical neurogenesis”. Dev Cell 35 (5): 553-67. *Equal contribution. Full text

Nedialkova D.D., Leidel S.A. 2015. “Optimization of codon translation rates via tRNA modifications maintains proteome integrity”. Cell 161 (7): 1606-1618. Full text

Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2013. “Arterivirus papain-like proteinase 1α”. Handbook of Proteolytic Enzymes. Oxford: Academic Press, pp. 2199-2204. 

Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2013. “Arterivirus papain-like proteinase 1β”. Handbook of Proteolytic Enzymes. Oxford: Academic Press, pp. 2205-2210.

Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2010. “Arterivirus nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs”. PLoS Pathog. 6(2): e1000772. Full text

Nedialkova D.D., Ulferts R., van den Born E., Lauber C., Gorbalenya A.E., Ziebuhr J., Snijder E.J. 2009. “Biochemical characterization of arterivirus nonstructural protein 11 reveals the nidovirus-wide conservation of a replicative endoribonuclease”. J Virol. 83 (11): 5671–5682. Full text

Tijms M.A*, Nedialkova D.D.*, Zevenhoven-Dobbe J.C.*, Gorbalenya A.E., Snijder E.J. 2007. “Arterivirus subgenomic mRNA synthesis and virion biogenesis depend on the multifunctional nsp1 autoprotease”. J Virol. 81 (19): 10496-505. *Equal contribution. Full text

Posthuma C.C., Nedialkova D.D., Zevenhoven-Dobbe J.C., Blokhuis J.H., Gorbalenya A.E., Snijder E.J. 2006. “Site-directed mutagenesis of the nidovirus replicative endoribonuclease NendoU exerts pleiotropic effects on the arterivirus life cycle”. J Virol. 80 (4): 1653-61 [OA]. Full text

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