Publications
Publications
Gao L.*, Behrens A.*, Rodschinka G., Forcelloni S., Wani S., Strasser K., Nedialkova D.D. 2024. “Selective gene expression maintains human tRNA anticodon pools during differentiation.” *Equal contribution. Nature Cell Biology. Full text
Zhao S., Cordes J., Caban K., Götz M., Mackens-Kiani T., Veltri A.J., Sinha N.K., Weickert P., Kaya S., Hewitt G., Nedialkova D.D., Fröhlich T., Beckmann R., Buskirk A.R., Green R., Stingele J. 2023. “RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks”. Molecular Cell 83(23): 4290-4303. e9. Full text
Behrens A., Nedialkova D.D. 2022. “Experimental and computational workflow for the analysis of tRNA pools from eukaryotic cells by mim-tRNAseq”. STAR Protocols 3, 101579. Full text
Behrens A., Rodschinka G., Nedialkova D.D. 2021. “High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq”. Molecular Cell 81(8):1802-1815.e7 Full text
Blasco-Moreno B.*, de Campos-Mata L.*, Böttcher R., García Martínez J., Jungfleisch J., Nedialkova D.D., Chattopadhyay S., Gas M.-E., Oliva B., Pérez-Ortín J.E., Leidel S.A., Choder M., Diez J. 2019. “The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins”. Nature Commun. 10(1):1298. *Equal contribution. Full text
Mittal N., Guimaraes J., Gross T., Schmidt A., Vina-Vilaseca A., Nedialkova D.D., Aeschimann F., Leidel S.A., Spang A., Zavolan M. 2017. "The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan". Nature Commun. 8(1):457. Full text
Jungfleisch J., Nedialkova D.D.*, Dotu I.*, Sloan K.E., Bruening L., Raineri E., Bohnsack M., Leidel S.A., Diez J. 2017. “A novel and conserved translational control mechanism involving RNA structures within coding sequences“. Genome Res 27(1):95-106. *Equal contribution. Full text
Lecanda A., Nilges B.S., Sharma P., Nedialkova D.D., Schwarz J., Vaquerizas J.M., Leidel S.A. 2016. “Dual randomization of oligonucleotides to reduce the bias in ribosome profiling libraries”. Methods 107: 89-97. Full text
Laguesse S.*, Creppe C.*, Nedialkova D.D., Prévot P.-P., Borgs L., Huysseune S., Franco B., Duysens G., Krusy N., Lee G., Thelen N., Thiry M., Close P., Chariot A., Malgrange B., Leidel S.A., Godin J.D., Nguyen L. 2015. “A dynamic unfolded protein response contributes to the control of cortical neurogenesis”. Dev Cell 35 (5): 553-67. *Equal contribution. Full text
Nedialkova D.D., Leidel S.A. 2015. “Optimization of codon translation rates via tRNA modifications maintains proteome integrity”. Cell 161 (7): 1606-1618. Full text
Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2013. “Arterivirus papain-like proteinase 1α”. Handbook of Proteolytic Enzymes. Oxford: Academic Press, pp. 2199-2204.
Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2013. “Arterivirus papain-like proteinase 1β”. Handbook of Proteolytic Enzymes. Oxford: Academic Press, pp. 2205-2210.
Nedialkova D.D., Gorbalenya A.E., Snijder E.J. 2010. “Arterivirus nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs”. PLoS Pathog. 6(2): e1000772. Full text
Nedialkova D.D., Ulferts R., van den Born E., Lauber C., Gorbalenya A.E., Ziebuhr J., Snijder E.J. 2009. “Biochemical characterization of arterivirus nonstructural protein 11 reveals the nidovirus-wide conservation of a replicative endoribonuclease”. J Virol. 83 (11): 5671–5682. Full text
Tijms M.A*, Nedialkova D.D.*, Zevenhoven-Dobbe J.C.*, Gorbalenya A.E., Snijder E.J. 2007. “Arterivirus subgenomic mRNA synthesis and virion biogenesis depend on the multifunctional nsp1 autoprotease”. J Virol. 81 (19): 10496-505. *Equal contribution. Full text
Posthuma C.C., Nedialkova D.D., Zevenhoven-Dobbe J.C., Blokhuis J.H., Gorbalenya A.E., Snijder E.J. 2006. “Site-directed mutagenesis of the nidovirus replicative endoribonuclease NendoU exerts pleiotropic effects on the arterivirus life cycle”. J Virol. 80 (4): 1653-61 [OA]. Full text