Publications of the Institute

Schwille, P.; Kanwa, N.; Kohyama, S.; Fröhlich, L.; Desai, A.: Mutual Dependence between Membrane Phase Separation and Bacterial Division Protein Dynamics in Synthetic Cell Models. Angewandte Chemie International Edition, e202417800 (2025)

Li, Y.; Chen, D.; Tang, T.; Shen, X.: HTR-VT: Handwritten text recognition with vision transformer. Pattern Recognition 158, 110967 (2025)

Li, X.; Wang, J.; Baptist, A. V.; Wu, W.; Heuer-Jungemann, A.; Zhang, T.: Crystalline Assemblies of DNA Nanostructures and their Functional Properties. Angewandte Chemie International Edition 64 (3), e202416948 (2025)

Peukes, J.; Dmitrieff, S.; Nédélec, F. J.; Briggs, J.: A physical model for M1-mediated influenza A virus assembly. Biophysical Journal 124 (1), pp. 134 - 144 (2025)

Alkhalaf, L. M.; Arrowsmith, C.; Balskus, E. P.; Bergamini, G.; Bhandari, R.; Chang, C. J.; Chen, P.; Chen, X.; Ciulli, A.; Cricco, J. A. et al.; Davis, B. G.; Delbianco, M.; Dudareva, N.; Dueber, E.; Ferguson, F.; de Giuseppe, P. O.; Hamachi, I.; Hammond, M. C.; Hatzios, S. K.; Do Heo, W.; Janet, J. P.; Kamat, S. S.; Knapp, S.; Krishnan, Y.; Lang, K.; Laraia, L.; Leveson-Gower, R. B.; Li, X. D.; Liu, D. R.; Liu, M.-F.; London, N.; Mahanta, N.; Mayor-Ruiz, C.; Muir, T.; Murakami, M. T.; Rhee, H.-W.; Robers, M.; Satz, A.; Schulman, B. A.; Shen, B.; Shoichet, B.; Strauss, E.; Suzuki, T.; Tiwary, P.; Waldmann, H.; Ward, T. R.; Weeks, A.; Weerapana, E.; Winter, G.: Thoughts for the future. Nature Chemical Biology 21, pp. 6 - 15 (2025)

Corvelo Benz, N.; Miranda, L.; Chen, D.; Sattler, J.: Antimicrobial drug recommendation from MALDI-TOF mass spectrometry with statistical guarantees using conformal prediction. Research in Computational Molecular Biology (RECOMB 2025) (2025)

Hama, N.; Aoki, S.; Chen, C.-B.; Hasegawa, A.; Ogawa, Y.; Vocanson, M.; Asada, H.; Chu, C.-Y.; Lan, C.-C. E.; Dodiuk-Gad, R. P. et al.; Fujiyama, T.; Hsieh, T.-S.; Ito, K.; Jerschow, E.; Mizukawa, Y.; Nakajima, S.; Nakamura, K.; Nicolas, J.-F.; Satoh, T. K.; Shiohara, T.; Takahashi, H.; Tohyama, M.; Ueda, T.; Ura, K.; Watanabe, H.; Yamaguchi, Y.; Nordmann, T. M.; Chung, W.-H.; Naisbitt, D.; Pincelli, C.; Pichler, W. J.; French, L. E.; Phillips, E.; Abe, R.: Recent progress in Stevens-Johnson syndrome/toxic epidermal necrolysis: Diagnostic criteria, pathogenesis and treatment. British Journal of Dermatology 192 (1), pp. 9 - 18 (2025)

Jerala, R.; Vidmar, S.; Šmidlehner, T.; Aupič, J.; Strmšek, Ž.; Ljubetič, A.; Xiao, F.; Hu, G.; Liu, C.; Beck, F. et al.; Erdmann, P. S.: Beyond Dimerization: Harnessing Tetrameric Coiled‐Coils for Nanostructure Assembly. Angewandte Chemie International Edition (2025)

Kravchenko, P.; Tachibana, K.: Rise and SINE: Roles of transcription factors and retrotransposons in zygotic genome activation. Nature Reviews Molecular Cell Biology 26 (1), pp. 68 - 79 (2025)

El Fissi, N.; Rosenberger, F. A.; Chang, K.; Wilhalm, A.; Barton-Owen, T.; Hansen, F. M.; Golder, Z.; Alsina, D.; Wedell, A.; Mann, M. et al.; Chinnery, P. F.; Freyer, C.; Wredenberg, A.: Preventing excessive autophagy protects from the pathology of mtDNA mutations in Drosophila melanogaster. Nature Communications 15, 10719 (2024)

Ke, Z.; Peacock, T. P.; Brown, J. C.; Sheppard, C. M.; Croll, T. I.; Kotecha, A.; Goldhill, D. H.; Barclay, W. S.; Briggs, J. A. G.: Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants. The EMBO Journal 43 (24), pp. 6469 - 6495 (2024)

He, F.; Aebersold, R.; Baker, M. S.; Bian, X.; Bo, X.; Chan, D. W.; Chang, C.; Chen, L.; Chen, X.; Chen, Y.-J. et al.; Cheng, H.; Collins, B. C.; Corrales, F.; Cox, J.; E, W.; Van Eyk, J. E.; Fan, J.; Faridi, P.; Figeys, D.; Gao, G. F.; Gao, W.; Gao, Z.-H.; Goda, K.; Goh, W. W. B.; Gu, D.; Guo, C.; Guo, T.; He, Y.; Heck, A. J. R.; Hermjakob, H.; Hunter, T.; Iyer, N. G.; Jiang, Y.; Jimenez, C. R.; Joshi, L.; Kelleher, N. L.; Li, M.; Li, Y.; Lin, Q.; Liu, C. H.; Liu, F.; Liu, G.-H.; Liu, Y.; Liu, Z.; Low, T. Y.; Lu, B.; Mann, M.; Meng, A.; Moritz, R. L.; Nice, E.; Ning, G.; Omenn, G. S.; Overall, C. M.; Palmisano, G.; Peng, Y.; Pineau, C.; Poon, T. C. W.; Purcell, A. W.; Qiao, J.; Reddel, R. R.; Robinson, P. J.; Roncada, P.; Sander, C.; Sha, J.; Song, E.; Srivastava, S.; Sun, A.; Sze, S. K.; Tang, C.; Tang, L.; Tian, R.; Vizcaíno, J. A.; Wang, C.; Wang, C.; Wang, X.; Wang, X.; Wang, Y.; Weiss, T.; Wilhelm, M.; Winkler, R.; Wollscheid, B.; Wong, L.; Xie, L.; Xie, W.; Xu, T.; Xu, T.; Yan, L.; Yang, J.; Yang, X.; Yates, J.; Yun, T.; Zhai, Q.; Zhang, B.; Zhang, H.; Zhang, L.; Zhang, L.; Zhang, P.; Zhang, Y.; Zheng, Y. Z.; Zhong, Q.; Zhu, Y.; Chan, D. W.; Tan, C. S. H.; E, W.; Van Eyk, J. E.; Gao, M.; Gao, Q.; Gao, Y.; Guo, X.; He, J.; He, J.; He, Q.-Y.; Hou, J.; Huang, C.; Jia, C.; Kuster, B.; Li, C.; Li, D.; Li, Y.; Li, Y.; Liu, S.; Liu, X.; Liu, Y.; Liu, Z.; Lu, H.; Nie, Y.; Okada, M.; Qian, G.; Qin, H.; Rao, Y.; Rao, Z.; Ren, X.; Ren, Y.; Shen, F.; Shen, L.; Su, S.; Tan, M.; Tang, B. Z.; Tao, S.-C.; Wang, J.; Wang, T.; Wei, L.; Wong, C. C. L.; Xie, X. S.; Xu, L.; Xu, P.; Xu, T.; Yang, H.; Yang, J.; Ye, M.; Ying, W.; Yu, X.; Yuan, Y.; Zeng, Q.; Zhan, Q.; Zhang, X.; Zhang, X.; Zhang, Y.; Zhong, N.-S.; Zhou, F.; Zhu, Y.; Zhang, Z.: π-HuB: The proteomic navigator of the human body. Nature 636 (8402), pp. 322 - 331 (2024)

Bogdanow, B.; Ruwolt, M.; Ruta, J.; Mühlberg, L.; Wang, C.; Zeng, W.-F.; Elofsson, A.; Liu, F.: Redesigning error control in cross-linking mass spectrometry enables more robust and sensitive protein-protein interaction studies. Molecular Systems Biology 21, pp. 90 - 106 (2024)

Nordmann, T. M.; Mund, A.; Mann, M.: A new understanding of tissue biology from MS-based proteomics at single-cell resolution. Nature Methods 21, pp. 2220 - 2222 (2024)

Schiotz, O. H.; Klumpe, S.; Plitzko, J. M.; Kaiser, C. J. O.: Cryo-electron tomography: en route to the molecular anatomy of organisms and tissues. Biochemical Society Transactions 52 (6), pp. 2415 - 2425 (2024)

Hickey, K. L.; Panov, A.; Whelan, E. M.; Schäfer, T.; Mizrak, A.; Kopito, R. R.; Baumeister, W.; Fernández-Busnadiego, R.; Harper, J. W.: Temporal control of acute protein aggregate turnover by UBE3C and NRF1-dependent proteasomal pathways. Proceedings of the National Academy of Sciences of the United States of America 121 (50), e2417390121 (2024)

Albrecht, V.; Müller-Reif, J. B.; Nordmann, T. M.; Mund, A.; Schweizer, L.; Geyer, P. E.; Niu, L.; Wang, J.; Post, F.; Oeller, M. et al.; Metousis, A.; Nielsen, A. B.; Steger, M.; Albrechtsen, N. J. W.; Mann, M.: Bridging the Gap From Proteomics Technology to Clinical Application: Highlights From the 68th Benzon Foundation Symposium. Molecular & Cellular Proteomics 23 (12), 100877 (2024)

Bondarieva, A.; Tachibana, K.: Genome folding and zygotic genome activation in mammalian preimplantation embryos. Current Opinion in Genetics & Development 89, 102268 (2024)

Kamps, J.; Yuste-Checa, P.; Mamashli, F.; Schmitz, M.; Herrera, M. G.; da Silva Correia, S. M.; Gogte, K.; Bader, V.; Zerr, I.; Hartl, F. U. et al.; Bracher, A.; Winklhofer, K. F.; Tatzelt, J.: Regulated Proteolysis Induces Aberrant Phase Transition of Biomolecular Condensates into Aggregates: A Protective Role for the Chaperone Clusterin. Journal of Molecular Biology 436 (23), 168839 (2024)

Khavnekar, S.; Erdmann, P. S.; Wan, W.: TOMOMAN: A software package for large-scale cryo-electron tomography data preprocessing, community data sharing and collaborative computing. Journal of Applied Crystallography 57, pp. 2010 - 2016 (2024)