Publications of the Institute

Zheng, X.; Mund, A.; Mann, M.: Protocol for spatial proteomic profiling of tonsil cancer microenvironments using multiplexed imaging-powered deep visual proteomics. STAR Protocols 6 (3), 103901 (2025)

Hansen, K. G.; Baxter-Koenigs, A.; Weiss, C. A. M.; Mcshane, E.; Churchman, L. S.: Transcription arrest induces formation of RNA granules in mitochondria. Life science alliance 8 (9), e202403082 (2025)

Fotovati, M.; Lee, J. W.; Taheri, M.; Ghassempour, A.; Rezadoost, H.; Seidel-Morgenstern, A.: Chromatographic method to isolate valuable ingredients of saffron extracts. Journal of Chromatography A 1757, 466098 (2025)

Riggi, M.; Iwasa, J. H.: Agent-based modeling of complex molecular mechanisms. Seminars in Cell & Developmental Biology 172, 103626 (2025)

Honsa, M.; Pachmayr, I.; Heinze, L.; Bas, L.; Masullo, L. A.; Kwon, J.; Perovic, A.; Schulman, B. A.; Jungmann, R.: Imaging Ligand-Receptor Interactions at Single-Protein Resolution with DNA-PAINT. Small Methods 9 (6), 2401799 (2025)

Weck, J. M.; Nair, R.; Kesici, M.-Z.; Shang, X.; Gavrilovic, S.; Monzel, C.; Heuer-Jungemann, A.: Effects of DNA Origami-Based Nanoagent Design on Apoptosis Induction in a Large 3D Cancer Spheroid Model. Small 21 (24), 2502490 (2025)

Kraehenbuehl, L.; Winkelbeiner, N.; Turko, P.; Staeger, R.; Ghosh, A.; Kaiser, V.; Stadler, P.-C.; Nordmann, T. M.; Brüggen, M.-C.; Levesque, M. P. et al.; Contassot, E.; French, L. E.; Dummer, R.; Meier-Schiesser, B.: Immune-Related Cutaneous Adverse Events Display Distinct Clinical and Molecular Characteristics, Depending on Immune Checkpoints Targeted. Cancers / Molecular Diversity Preservation International (MDPI) 17 (12), 1992 (2025)

Klebl, D. P.; McMillan, S. N.; Risi, C.; Forgacs, E.; Virok, B.; Atherton, J. L.; Harris, S. A.; Stofella, M.; Winkelmann, D. A.; Sobott, F. et al.; Galkin, V. E.; Knight, P. J.; Muench, S. P.; Scarff, C. A.; White, H. D.: Swinging lever mechanism of myosin directly shown by time-resolved cryo-EM. Nature 642 (8067), pp. 519 - 526 (2025)

Rosenberger, F. A.; Mädler, S. C.; Thorhauge, K. H.; Steigerwald, S.; Fromme, M.; Lebedev, M.; Weiss, C. A. M.; Oeller, M.; Wahle, M.; Metousis, A. et al.; Zwiebel, M.; Schmacke, N. A.; Detlefsen, S.; Boor, P.; Fabian, O.; Frankova, S.; Krag, A.; Strnad, P.; Mann, M.: Deep Visual Proteomics maps proteotoxicity in a genetic liver disease. Nature 642 (8067), pp. 484 - 491 (2025)

Paloja, K.; Rodriguez-Franco, H. J.; Jungmann, R.; Parish, I. A.; Bastings, M. M. C.: Multivalent Presentation of TCRs on DNA Nanostructures as a Sensitive Probe for pMHC Detection. ACS Applied Nano Materials 8 (24), pp. 12490 - 12497 (2025)

Velazco, A.; Glen, T.; Klumpe, S.; Pennington, A.; Zhang, J.; Smith, J. L. R.; Glynn, C.; Bowles, W.; Kobylynska, M.; Fleck, R. A. et al.; Naismith, J. H.; Kim, J. S.; Darrow, M. C.; Grange, M.; Kirkland, A. I.; Dumoux, M.: Reduction of SEM charging artefacts in native cryogenic biological samples. Nature Communications 16, 5204 (2025)

Bone, R. A.; Lowndes, M. P.; Raineri, S.; Riveiro, A.; Lundregan, S. L.; Dall, M.; Sulek, K.; Romero, J. A. H.; Malzard, L.; Koigi, S. et al.; Heckenbach, I. J.; Solis-Mezarino, V.; Voelker-Albert, M.; Vasilopoulou, C.; Meier, F.; Trusina, A.; Mann, M.; Nielsen, M.; Treebak, J. T.; Brickman, J. M.: Altering metabolism programs cell identity via NAD+-dependent deacetylation. The EMBO Journal 44 (11), pp. 3056 - 3084 (2025)

Coscia, F.; Nielsen, A. B.; Weigert, M.; Watters, K.; Javellana, M.; Anglesio, M.; Yamada, S. D.; Lastra, R. R.; Mann, M.; Lengyel, E.: A Proteogenomic View of Synchronous Endometrioid Endometrial and Ovarian Cancer. Clinical Cancer Research 31 (11), pp. 2230 - 2240 (2025)

Skowronek, P.; Wallmann, G.; Wahle, M.; Willems, S.; Mann, M.: An accessible workflow for high-sensitivity proteomics using parallel accumulation–serial fragmentation (PASEF). Nature Protocols 20, pp. 1700 - 1729 (2025)

Speidel, J. D.; Yu, K.; Böttcher, R. T.: Phosphorylation of SNX17 impedes activation of Retriever-mediated sorting. Journal of Biological Chemistry 301 (6), 110222 (2025)

Madupe, P. P.; Koenig, C.; Patramanis, I.; Ruther, P. L.; Hlazo, N.; Mackie, M.; Tawane, M.; Krueger, J.; Taurozzi, A. J.; Troche, G. et al.; Kibii, J.; Pickering, R.; Dickinson, M. R.; Sahle, Y.; Kgotleng, D.; Musiba, C.; Manthi, F.; Bell, L.; DuPlessis, M.; Gilbert, C.; Zipfel, B.; Kuderna, L. F. K.; Lizano, E.; Welker, F.; Kyriakidou, P.; Cox, J.; Mollereau, C.; Tokarski, C.; Blackburn, J.; Ramos-Madrigal, J.; Marques-Bonet, T.; Penkman, K.; Zanolli, C.; Schroeder, L.; Racimo, F.; Olsen, J. V.; Ackermann, R. R.; Cappellini, E.: Enamel proteins reveal biological sex and genetic variability in southern African Paranthropus. Science 388 (6750), pp. 969 - 973 (2025)

Waltz, F.; Righetto, R. D.; Lamm, L.; Salinas-Giege, T.; Kelley, R.; Zhang, X.; Obr, M.; Khavnekar, S.; Kotecha, A.; Engel, B. D.: In-cell architecture of the mitochondrial respiratory chain. Science 387 (6740), pp. 1296 - 1301 (2025)

Beckwith, K. S.; Brunner, A.; Morero, N. R.; Jungmann, R.; Ellenberg, J.: Nanoscale DNA tracing reveals the self-organization mechanism of mitotic chromosomes. Cell 188 (10), pp. 2656 - 2669 (2025)

Pohlschroder, M.; Schulze, S.; Pfeiffer, F.; Hong, Y.: Haloferax volcanii: a versatile model for studying archaeal biology. Journal of Bacteriology 207, e00062-25 (2025)

Olabisi-Adeniyi, E.; McAlister, J. A.; Ferretti, D.; Cox, J.; Geddes-McAlister, J.: ProteoPlotter: An Executable Proteomics Visualization Tool Compatible with Perseus. Journal of Proteome Research 24 (6), pp. 2698 - 2708 (2025)