Publications of the Institute

Li, Y.; Chen, D.; Tang, T.; Shen, X.: HTR-VT: Handwritten text recognition with vision transformer. Pattern Recognition 158, 110967 (2025)

Burgy, O.; Mayr, C. H.; Schenesse, D.; Papakonstantinou, E. F.; Ballester, B.; Sengupta, A.; She, Y.; Hu, Q.; Melo-Narvaez, M. C.; Jain, E. et al.; Pestoni, J. C.; Mozurak, M.; Estrada-Bernal, A.; Onwuka, U.; Coughlan, C.; Parimon, T.; Chen, P.; Heimerl, T.; Bange, G.; Schmeck, B. T.; Lindner, M.; Hilgendorff, A.; Ruppert, C.; Guenther, A.; Mann, M.; Yildirim, A. O.; Eickelberg, O.; Jung, A. L.; Schiller, H. B.; Lehmann, M.; Burgstaller, G.; Koenigshoff, M.: Fibroblast-derived extracellular vesicles contain SFRP1 and mediate pulmonary fibrosis. JCI Insight 9 (18), e168889 (2024)

Kabatnik, S.; Post, F.; Drici, L.; Bartels, A. S.; Strauss, M. T.; Zheng, X.; Madsen, G. I.; Mund, A.; Rosenberger, F. A.; Moreira, J. et al.; Mann, M.: Spatial characterization and stratification of colorectal adenomas by deep visual proteomics. iScience 27 (9), 110620 (2024)

Wagner, J.; Carvajal, A. I.; Bracher, A.; Beck, F.; Wan, W.; Bohn, S.; Körner, R.; Baumeister, W.; Fernandez-Busnadiego, R.; Hartl, F. U.: Visualizing chaperonin function in situ by cryo-electron tomography. Nature 633 (8029), pp. 459 - 464 (2024)

Wogram, E.; Sümpelmann, F.; Dong, W.; Rawat, E.; Fernández Maestre, I.; Fu, D.; Braswell, B.; Khalil, A.; Buescher, J. M.; Mittler, G. et al.; Borner, G. H. H.; Vlachos, A.; Tholen, S.; Schilling, O.; Bell, G. W.; Rambold, A. S.; Akhtar, A.; Schnell, O.; Beck, J.; Abu-Remaileh, M.; Prinz, M.; Jaenisch, R.: Rapid phagosome isolation enables unbiased multiomic analysis of human microglial phagosomes. Immunity 57, pp. 2216 - 2231 (2024)

Skadborg, S. K.; Maarup, S.; Draghi, A.; Borch, A.; Hendriksen, S.; Mundt, F.; Pedersen, V.; Mann, M.; Christensen, I. J.; Skjoth-Ramussen, J. et al.; Yde, C. W.; Kristensen, B. W.; Poulsen, H. S.; Hasselbalch, B.; Svane, I. M.; Lassen, U.; Hadrup, S. R.: Nivolumab Reaches Brain Lesions in Patients with Recurrent Glioblastoma and Induces T-cell Activity and Upregulation of Checkpoint Pathways. Cancer Immunology Research 12 (9), pp. 1202 - 1220 (2024)

Stark, K.; Kilani, B.; Stockhausen, S.; Busse, J.; Schubert, I.; Tran, T.-D.; Gaertner, F.; Leunig, A.; Pekayvaz, K.; Nicolai, L. et al.; Fumagalli, V.; Stermann, J.; Stephan, F.; David, C.; Muller, M. B.; Heyman, B.; Lux, A.; Guerreiro, A. d. P.; Frenzel, L. P.; Schmidt, C. Q.; Dopler, A.; Moser, M.; Chandraratne, S.; von Bruehl, M.-L.; Lorenz, M.; Korff, T.; Rudelius, M.; Popp, O.; Kirchner, M.; Mertins, P.; Nimmerjahn, F.; Iannacone, M.; Sperandio, M.; Engelmann, B.; Verschoor, A.; Massberg, S.: Antibodies and complement are key drivers of thrombosis. Immunity 57 (9), pp. 2140 - 2156 (2024)

Link, K.; Muhandes, L.; Polikarpova, A.; Lammermann, T.; Sixt, M.; Fassler, R.; Roers, A.: Integrin b1-mediated mast cell immune-surveillance of blood vessel content. The journal of Allergy and Clinical Immunology 154 (3), pp. 745 - 753 (2024)

Grzes, M.; Jaiswar, A.; Grochowski, M.; Wojtys, W.; Kazmierczak, W.; Olesinski, T.; Lenarcik, M.; Nowak-Niezgoda, M.; Kolos, M.; Canarutto, G. et al.; Piazza, S.; Wisniewski, J. R.; Walerych, D.: A common druggable signature of oncogenic c-Myc, mutant KRAS and mutant p53 reveals functional redundancy and competition among oncogenes in cancer. Cell Death and Disease 15 (8), 638 (2024)

Cairo, L. V.; Hong, X.; Mueller, M. B. D.; Yuste-Checa, P.; Jagadeesan, C.; Bracher, A.; Park, S.-H.; Hayer-Hartl, M.; Hartl, F. U.: Stress-dependent condensate formation regulated by the ubiquitin-related modifier Urm1. Cell 187 (17), pp. 4656 - 4673.e28 (2024)

Chen, Y. Y.; Evavold, C. L.; Mann, M.; Davenport, E. R.; McFall-Ngai, M.; Bienko, M.; Ueda, H. R.; Tjahjono, N.; Tian, L.; Anikeeva, P. et al.; Liu, J.-J. G.; Deans, T. L.; Shen, X.: What tool or method do you wish existed? Cell 187 (17), pp. 4433 - 4438 (2024)

Bernhardt, A. M.; Oeller, M.; Friedrich, I.; Kocakavuk, E.; Nachman, E.; Peikert, K.; Roderigo, M.; Rossmann, A.; Schroeter, T.; Wilhelm, L. O. et al.; Prell, T.; van Riesen, C.; Nieweler, J.; Katzdobler, S.; Weiler, M.; Jacobi, H.; Warnecke, T.; Claus, I.; Palleis, C.; Breimann, S.; Falkenburger, B.; Brandt, M.; Hermann, A.; Rumpf, J.-J.; Classen, J.; Hoeglinger, G.; Gandor, F.; Levin, J.; Giese, A.; Janzen, A.; Oertel, W. H.: Risk willingness in multiple system atrophy and Parkinson's disease understanding patient preferences. npj Parkinson's Disease 10 (1), 158 (2024)

Sailer, A.-L.; Jevtic, Z.; Stoll, B.; Woertz, J.; Sharma, K.; Urlaub, H.; Dyall-Smith, M.; Pfeiffer, F.; Marchfelder, A.; Lenz, C.: Iron starvation results in up-regulation of a probable Haloferax volcanii siderophore transporter. Frontiers in Microbiology 15, 1422844 (2024)

Huang, Y.; Bergant, V.; Grass, V.; Emslander, Q.; Hamad, M. S.; Hubel, P.; Mergner, J.; Piras, A.; Krey, K.; Henrici, A. et al.; Oellinger, R.; Tesfamariam, Y. M.; Dalla Rosa, I.; Bunse, T.; Sutter, G.; Ebert, G.; Schmidt, F. I.; Way, M.; Rad, R.; Bowie, A. G.; Protzer, U.; Pichlmair, A.: Multi-omics characterization of the monkeypox virus infection. Nature Communications 15 (1), 6778 (2024)

Rodriguez-Ulloa, A.; Rosales, M.; Ramos, Y.; Guirola, O.; Gonzalez, L. J.; Wiśniewski, J. R.; Perera, Y.; Perea, S. E.; Besada, V.: "Phosphoproteomic quantification based on phosphopeptide intensity or occupancy? An evaluation based on casein kinase 2 downstream effects". Journal of Proteomics 307, 105269 (2024)

Soxpollard, N.; Strauss, S.; Jungmann, R.; MacPherson, I. S.: Selection of antibody-binding covalent aptamers. Communications Chemistry 7 (1), 174 (2024)

Steen, P. R.; Unterauer, E. M.; Masullo, L. A.; Kwon, J.; Perovic, A.; Jevdokimenko, K.; Opazo, F.; Fornasiero, E. F.; Jungmann, R.: The DNA-PAINT palette: a comprehensive performance analysis of fluorescent dyes. Nature Methods (2024)

Massacci, G.; Venafra, V.; Zwiebel, M.; Wahle, M.; Cerroni, R.; Bissacco, J.; Perfetto, L.; Michienzi, V.; Stefani, A.; Mercuri, N. B. et al.; Schirinzi, T.; Sacco, F.: Stage-dependent phosphoproteome remodeling of Parkinson's disease blood cells. Neurobiology of Disease 200, 106622 (2024)

Wang, C.; Jiang, W.; Leitz, J.; Yang, K.; Esquivies, L.; Wang, X.; Shen, X.; Held, R. G.; Adams, D. J.; Basta, T. et al.; Hampton, L.; Jian, R.; Jiang, L.; Stowell, M. H. B.; Baumeister, W.; Guo, Q.; Brunger, A. T.: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature 631, pp. 899 - 904 (2024)

Beaufort, N.; Ingendahl, L.; Merdanovic, M.; Schmidt, A.; Podlesainski, D.; Richter, T.; Neumann, T.; Kuszner, M.; Vetter, I. R.; Stege, P. et al.; Burston, S. G.; Filipovic, A.; Ruiz-Blanco, Y. B.; Bravo-Rodriguez, K.; Mieres-Perez, J.; Beuck, C.; Uebel, S.; Zobawa, M.; Schillinger, J.; Malik, R.; Todorov-Voelgyi, K.; Rey, J.; Roberti, A.; Hagemeier, B.; Wefers, B.; Mueller, S. A.; Wurst, W.; Sanchez-Garcia, E.; Zimmermann, A.; Hu, X.-Y.; Clausen, T.; Huber, R.; Lichtenthaler, S. F.; Schmuck, C.; Giese, M.; Kaiser, M.; Ehrmann, M.; Dichgans, M.: Rational correction of pathogenic conformational defects in HTRA1. Nature Communications 15 (1), 5944 (2024)