Publications of Isabell Bludau
All genres
Journal Article (18)
1.
Journal Article
39 (8), btad461 (2023)
AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics. Bioinformatics 2.
Journal Article
22, pp. 1520 - 1536 (2023)
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems. Journal of Proteome Research 3.
Journal Article
22, pp. 681 - 696 (2023)
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of Proteome Research 4.
Journal Article
22 (2), 100485 (2023)
Native Size-Exclusion Chromatography-Based Mass Spectrometry Reveals New Components of the Early Heat Shock Protein 90 Inhibition Response Among Limited Global Changes. Molecular and Cellular Proteomics 5.
Journal Article
13 (1), 7238 (2022)
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics. Nature Communications 6.
Journal Article
20 (5), e3001636 (2022)
The structural context of posttranslational modifications at a proteome-wide scale. PLoS Biology 7.
Journal Article
18 (5), e10712 (2022)
The impact of genomic variation on protein phosphorylation states and regulatory networks. Molecular Systems Biology 8.
Journal Article
A practical guide to interpreting and generating bottom-up proteomics data visualizations. Proteomics, e2100103 (2022)
9.
Journal Article
38 (3), pp. 849 - 852 (2022)
AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge. Bioinformatics 10.
Journal Article
12 (1), 3810 (2021)
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. Nature Communications 11.
Journal Article
18 (5), pp. 520 - 527 (2021)
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data. Nature Methods 12.
Journal Article
12 (1), 254 (2021)
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology. Nature Communications 13.
Journal Article
12 (1), 6053 (2021)
Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling. Nature Communications 14.
Journal Article
21 (6), pp. 327 - 340 (2020)
Proteomic and interactomic insights into the molecular basis of cell functional diversity. Nature Reviews Molecular Cell Biology 15.
Journal Article
21, pp. 327 - 340 (2020)
Proteomic and interactomic insights into the molecular basis of cell functional diversity. NATURE REVIEWS MOLECULAR CELL BIOLOGY 16.
Journal Article
15 (8), pp. 2341 - 2386 (2020)
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes. Nature Protocols 17.
Journal Article
16 (12), e9813 (2020)
Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis. Molecular Systems Biology 18.
Journal Article
17 (12), pp. 1229 - 1236 (2020)
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition. Nature Methods Review Article (1)
19.
Review Article
Discovery-Versus Hypothesis-Driven Detection of Protein-Protein Interactions and Complexes. (2021)