Publications of Isabell Bludau
All genres
Journal Article (20)
1.
Journal Article
624, pp. 192 - 200 (2023)
The social and structural architecture of the yeast protein interactome. Nature 2.
Journal Article
39 (8), btad461 (2023)
AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics. Bioinformatics 3.
Journal Article
22, pp. 1520 - 1536 (2023)
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems. Journal of Proteome Research 4.
Journal Article
22, pp. 681 - 696 (2023)
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of Proteome Research 5.
Journal Article
22 (2), 100485 (2023)
Native Size-Exclusion Chromatography-Based Mass Spectrometry Reveals New Components of the Early Heat Shock Protein 90 Inhibition Response Among Limited Global Changes. Molecular and Cellular Proteomics 6.
Journal Article
Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Molecular Systems Biology, e1150 (2023)
7.
Journal Article
13 (1), 7238 (2022)
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics. Nature Communications 8.
Journal Article
20 (5), e3001636 (2022)
The structural context of posttranslational modifications at a proteome-wide scale. PLoS Biology 9.
Journal Article
18 (5), e10712 (2022)
The impact of genomic variation on protein phosphorylation states and regulatory networks. Molecular Systems Biology 10.
Journal Article
A practical guide to interpreting and generating bottom-up proteomics data visualizations. Proteomics, e2100103 (2022)
11.
Journal Article
38 (3), pp. 849 - 852 (2022)
AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge. Bioinformatics 12.
Journal Article
12 (1), 3810 (2021)
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. Nature Communications 13.
Journal Article
18 (5), pp. 520 - 527 (2021)
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data. Nature Methods 14.
Journal Article
12 (1), 254 (2021)
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology. Nature Communications 15.
Journal Article
12 (1), 6053 (2021)
Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling. Nature Communications 16.
Journal Article
21 (6), pp. 327 - 340 (2020)
Proteomic and interactomic insights into the molecular basis of cell functional diversity. Nature Reviews Molecular Cell Biology 17.
Journal Article
21, pp. 327 - 340 (2020)
Proteomic and interactomic insights into the molecular basis of cell functional diversity. NATURE REVIEWS MOLECULAR CELL BIOLOGY 18.
Journal Article
15 (8), pp. 2341 - 2386 (2020)
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes. Nature Protocols 19.
Journal Article
16 (12), e9813 (2020)
Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis. Molecular Systems Biology 20.
Journal Article
17 (12), pp. 1229 - 1236 (2020)
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition. Nature Methods