Journal Publications (*: Co-first, °: Co-corresponding)



  • J. Hellmeier*, S. Strauss*, S. Xu, L.A. Masulla, E.M. Unterauer, R. Kowalewski, R. Jugnmann
    Quantification of absolute labeling efficiency at the single-protein level
    Nature Methods (2024). In press
  • E.M. Unterauer*, S.S. Boushehri*, K. Jevdokimenko*, L.A. Masullo, M. Ganji, S. Sograte-Idrissi, R. Kowalewski, S. Strauss, S.C.M. Reinhardt, A. Perovic, C. Marr, F. Opazo, E.F. Fornasiero°, R. Jungmann°
    Spatial proteomics in neurons at single-protein resolution
    Cell (2024). 187: 1785–1800
  • K. Cramer, S.C.M. Reinhardt, A. Auer,  J.Y. Shin°, R. Jungmann°
    Comparing divisome organization between vegetative and sporulating Bacillus subtilis at the nanoscale using  DNA- PAINT
    Science Advances (2024). 10: eadk5847
  • K. Paloja, J. Weiden, J. Hellmeier, A.S. Eklund, S.C.M. Reinhardt, I.A. Parish, R. Jungmann, M.M.C. Bastings
    Balancing the Nanoscale Organization in Multivalent Materials for Functional Inhibition of the Programmed Death-1 Immune Checkpoint
    ACS Nano (2024). 18: 1381–1395



  • I.M. Glueck, G.P. Mathias, S. Strauss, V. Rat, I. Gialdini, T.S. Ebert, C. Stafford, G. Agam, S. Manley, V. Hornung, R. Jungmann, C. Sieben°, D.C. Lamb°
    Nanoscale organization of the endogenous ASC speck
    iScience (2023). 26, 108382
  • C. Niederauer, C. Nguyen, M. Wang-Henderson, J. Stein, S. Strauss, A. Cumberworth, F. Stehr, R. Jungmann, P. Schwille, K.A. Ganzinger
    Dual-color DNA-PAINT single-particle tracking enables extended studies of membrane protein interactions
    Nature Communications (2023). 14:4345
  • S.C.M. Reinhardt*, L.A. Masullo*, I. Baudrexel*, P.R. Steen*, R. Kowalewski, A.S. Eklund, S. Strauss, E.M. Unterauer, T. Schlichthaerle, M.T. Strauss, C. Klein, R. Jungmann
    Ångström-resolution fluorescence microscopy
    Nature (2023). 617: 711–716
  • A. Ferapontov, M. Omer, I. Baudrexel, J.S. Nielsen, D.M. Dupont, K. Juul-Madsen, P. Steen, A.S. Eklund, S. Thiel, T. Vorup-Jensen, R. Jungmann, J. Kjems, and S.E. Degn
    Antigen footprint governs activation of the B cell receptor
    Nature Communications (2023). 14: 976
  • S. Strauss, J. Acker, G. Papa, D. Desiro, F. Schueder, A. Borodavka°, R. Jungmann°
    Principles of RNA recruitment to viral ribonucleoprotein condensates in a segmented dsRNA virus
    elife (2023). 12: e68670
  • F. Schueder, P. Mangeol, E.H. Chan, R. Rees, J. Schünemann, R. Jungmann°, D. Görlich°, F. Schnorrer°
    Nanobodies combined with DNA-PAINT super-resolution reveal a staggered titin nano-architecture in flight muscles
    eLife (2023). 12: e79344
  • A.S. Eklund, R. Jungmann
    Optimized coiled-coil interactions for multiplexed Peptide-PAINT
    Small (2023), 19, 2206347
  • S. Strauss, R. Jungmann
    Slow-Off-Rate-Modified Aptamer Labeling for Fluorescence Microscopy and DNA-PAINT
    In: Mayer, G., Menger, M.M. (eds) Nucleic Acid Aptamers.
    Methods in Molecular Biology (2023)



  • M. Fazel, M.J. Wester, D.J. Schodt, S. Restrepo Cruz, S. Strauss, F. Schueder, T. Schlichthaerle, J.M. Gillette, D.S. Lidke, B. Rieger, R. Jungmann, K.A. Lidke
    High-precision estimation of emitter positions using Bayesian grouping of localizations
    Nature Communications (2022). 13: 7152 
  • H. Khateb, R.S. Sørensen, K. Cramer, A.S. Eklund, J. Kjems, R.L. Meyer, R. Jungmann, and D.S. Sutherland
    The Role of Nanoscale Distribution of Fibronectin in the Adhesion of Staphylococcus aureus Studied by Protein Patterning and DNA-PAINT
    ACS Nano (2022). 16(7): 10392-10403
  • A.C. O’Neill*, F. Uzbas*, G. Antognolli*, F. Merino*, K. Draganova, A. Jäck, S. Zhang, G. Pedini, J.P. Schessner, K. Cramer, A. Schepers, F. Metzger, M. Esgleas, P. Smialowski, R. Guerrini, S. Falk, R. Feederle, S. Freytag, Z. Wang, M. Bahlo, R. Jungmann, C. Bagni, G.H.H. Borner, S.P. Robertson, S.M. Hauck and M. Götz 
    Spatial centrosome proteome of human neural cells uncovers disease-relevant heterogeneity
    Science (2022). 376 
  • N. Gimber°, S. Strauss, R. Jungmann, J. Schmoranzer°
    Simultaneous multicolor DNA-PAINT without sequential fluid exchange using spectral demixing
    Nano Letters (2022). 22(7): 2682-2690
  • E.M. Unterauer and R. Jungmann
    Quantitative Imaging with DNA-PAINT for Applications in Neuroscience
    Frontiers in Synaptic Neuroscience (2022). 13: 798267



  • J. Stein*, F. Stehr*, R. Jungmann, P. Schwille
    Calibration-free counting of low molecular copy numbers in single DNA-PAINT localization clusters
    Biophysical Reports (2021). 1: 100032
  • A.S. Eklund*, A. Comberlato*, I.A. Parish, R. Jungmann°, M.M.C. Bastings°
    Quantification of Strand Accessibility in Biostable DNA Origami with Single-Staple Resolution
    ACS Nano (2021). 15(11): 17668-17677
  • F. Geiger, J. Acker, G. Papa, X. Wang, W.E. Arter, K.L. Saar, N.A. Erkamp, R. Qi, J.P.K. Bravo, S. Strauss, G. Krainer, O.R. Burrone, R. Jungmann, T.P.J. Knowles, H. Engelke, A. Borodavka
    Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses
    EMBO Journal (2021). e107711
  • F.N. Gür, S. Kempter, F. Schueder, C. Sikeler, M.J. Urban, R. Jungmann, P.C. Nickels, T. Liedl
    Double- to single-strand transition induces forces and motion in DNA origami structures
    Advanced Materials (2021). 33: 202101986 
  • F. Stehr*, J. Stein*, J. Bauer, C. Niederauer, R. Jungmann, K. Ganzinger°, P. Schwille°
    Tracking single particle for hours via continuous DNA-mediated fluorophore exchange
    Nature Communications (2021). 12: 4432
  • S.M. Früh, U. Matti, P.R. Spycher, M. Rubini, S. Lickert, T. Schlichthaerle, R. Jungmann, V. Vogel, J. Ries, I. Schoen
    Site-Specifically-Labeled Antibodies for Super-Resolution Microscopy Reveal In Situ Linkage Errors
    ACS Nano (2021). 15(7): 12161-12170 
  • T.A.P.M. Huijben, H. Heydarian, A. Auer, F. Schueder, R. Jungmann, S. Stallinga, B. Rieger 
    Detecting structural heterogeneity in single-molecule localization microscopy data
    Nature Communications (2021). 12: 3791
  • M. Lelek, M.T. Gyparaki, G. Beliu, F. Schueder, J. Griffié, S. Manley°, R. Jungmann°, M. Sauer°, M. Lakadamyali°, C. Zimmer°
    Single-molecule localization microscopy
    Nature Reviews Methods Primers (2021). 1: 39
  • H. Heydarian, M. Joosten, A. Przybylski, F. Schueder, R. Jungmann, B. van Werkhoven, J. Keller-Findeisen, J. Ries, S. Stallinga, M. Bates, B. Rieger
    3D particle averaging and detection of macromolecular symmetry in localization microscopy
    Nature Communications (2021). 12: 2847
  • T. Schlichthaerle*, C. Lindner*, R. Jungmann
    Super-resolved visualization of single DNA-based tension sensors in cell adhesion
    Nature Communications (2021). 12: 2510
  • M. Ganji*, T. Schlichthaerle*, A.S. Eklund, S. Strauss, R. Jungmann
    Quantitative assessment of labeling probes for super-resolution microscopy using designer DNA nanostructures
    ChemPhysChem (2021). 22(10): 911–914 
  • A. Dasgupta, J. Deschamps, U. Matti, U. Hübner, J. Becker, S. Strauss, R. Jungmann, R. Heintzmann, J. Ries 
    Direct supercritical angle localization microscopy for nanometer 3D superresolution
    Nature Communications (2021). 12: 1180
  • L.S. Fischer*, C. Klingner*, T. Schlichthaerle*, M.T. Strauss, R. Böttcher, R. Fässler°, R. Jungmann°, C. Grashoff°
    Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion
    Nature Communications (2021). 12: 919
  • J. Hellmeier, R. Platzer, A.S. Eklund, T. Schlichthaerle, A. Karner, V. Motsch, M.C. Schneider, E. Kurz, V. Bamieh, M. Brameshuber, J. Preiner, R. Jungmann, H. Stockinger, G.J. Schütz, J.B. Huppa, E. Sevcsik
    DNA origami demonstrate the unique stimulatory power of single pMHCs as T cell antigens
    PNAS (2021). 118(4): e2016857118
  • F. Schueder*, J. Lara-Gutiérrez*, D. Haas, K.S. Beckwith, P. Yin, J. Ellenberg, R. Jungmann 
    Super-resolution spatial proximity detection with proximity-PAINT
    Angewandte Chemie Int. Ed. (2021). 60: 716–720



  • S.F.J. Wickham, A. Auer, J. Min, N. Ponnuswamy, J.B. Woehrstein, F. Schueder, M.T. Strauss, J. Schnitzbauer, B. Nathwani, Z. Zhao, S.D. Perrault, J. Hahn, S. Lee, M.M. Bastings, S.W. Helmig, A.L Kodal, P. Yin, R. Jungmann°, W.M. Shih°
    Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
    Nature Communications (2020). 11: 5768
  • A.P. Curd, J. Leng, R.E. Hughes, A.J. Cleasby, B. Rogers, C.H. Trinh, M.A. Baird, Y. Takagi, C. Tiede, C. Sieben, S. Manley, T. Schlichthaerle, R. Jungmann, J. Ries, H. Shroff, M. Peckham
    Nanoscale pattern extraction from relative positions of sparse 3D localizations
    Nano Letters (2020). 21(3): 1213-1220
  • F. Schueder, E.M. Unterauer, M. Ganji, R. Jungmann
    DNA-barcoded fluorescence microscopy for spatial omics
    Proteomics (2020). 20(23): 1900368
  • J.M. Brockman, H. Su, A.T. Blanchard, Y. Duan, T. Meyer, M.E. Quach, R. Glazier, A. Bazrafshan, R.L. Bender, A.V. Kellner, H. Ogasawara, R. Ma, F. Schueder, B.G. Petrich, R. Jungmann, R. Li, A.L. Mattheyses, Y. Ke, K. Salaita 
    Live-cell super-resolved PAINT imaging of piconewton cellular traction forces
    Nature Methods (2020). 17: 1018-1024 
  • A.S. Eklund*, M. Ganji*, G. Gavins, O. Seitz, R. Jungmann
    Peptide-PAINT super-resolution imaging using transient coiled coil interactions
    Nano Letters (2020). 20(09): 6732-6737
  • S. Strauss, R. Jungmann
    Up to 100-fold speed-up and multiplexing in optimized DNA-PAINT
    Nature Methods (2020). 17: 78-791 
  • A. Auer, M.T. Strauss, S. Strauss, R. Jungmann
    nanoTRON: a Picasso module for MLP-based classification of super-resolution data
    Bioinformatics (2020). 36(11): 3620-3622
  • S. Sograte-Idrissi, T. Schlichthaerle, C.J. Duque-Afonso, M. Alevra, S. Strauss, T. Moser, R. Jungmann, S.O. Rizzoli, F. Opazo
    Circumvention of common labelling artefacts using secondary nanobodies
    Nanoscale (2020). 12: 10226-10239
  • M.I.E. Harwardt, M.S. Schröder, Y. Li, S. Malkusch, P. Freund, S. Gupta, N. Janjic, S. Strauss, R. Jungmann, M.S. Dietz°, M. Heilemann° 
    Single-Molecule Super-Resolution Microscopy Reveals Heteromeric Complexes of MET and EGFR upon Ligand Activation
    International Journal of Molecular Sciences (2020). 21(8): 2803 
  • J. Cnossen*, T. Hinsdale*, R. Thorsen, F. Schueder, R. Jungmann, C.S. Smith°, B. Rieger°, S. Stallinga°
    Localization microscopy at doubled precision with patterned illumination
    Nature Methods (2020). 17: 59-63



  • F. Schueder, J. Stein, F. Stehr, A. Auer, B. Sperl, M.T. Strauss, P. Schwille, R. Jungmann
    An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions
    Nature Methods (2019). 16: 1101-1104 
  • R. Sasmala, N. Das Sahaa, F. Schueder, D. Joshie, S. Vasuf, R. Jungmann, S.S. Agasti
    Dynamic Host-Guest Interaction Enables Autonomous Single Molecule Blinking and Super-Resolution Imaging
    Chemical Communications (2019). 55: 14430-14433
  • J. Stein*, F. Stehr*, P. Schueler, P. Blumhardt, F. Schueder, J. Mücksch, R. Jungmann, P. Schwille
    Towards absolute molecular numbers in DNA-PAINT
    Nano Letters (2019). 19(11): 8182-8190
  • H. Goetzke, M. Kilisch, M. Martínez-Carranza, S. Sograte-Idrissi, A. Rajavel, T. Schlichthaerle, N. Engels, R. Jungmann, P. Stenmark, F. Opazo, S. Frey
    The ALFA-tag is a highly versatile tool for nanobody-based bioscience applications
    Nature Communications (2019). 10: 4403
  • M. Fazel, M.J. Wester, H. Mazloom-Farsibaf, M.B.M. Meddens, A.S. Eklund, T. Schlichthaerle, F. Schueder, R. Jungmann, K.A. Lidke 
    Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo
    Scientific Reports (2019). 9: 13791
  • C. Böger, A. Hafner, T. Schlichthaerle, M.T. Strauss, S. Malkusch, U. Endesfelder, R. Jungmann, E.M. Schuman°, M. Heilemann°
    Super-resolution imaging and estimation of protein copy numbers at single synapses with DNA-point accumulation for imaging in nanoscale topography
    Neurophotonics (2019). 6(3): 035008
  • F. Frottin, F. Schueder, S. Tiwary, R. Gupta, R. Koerner, T. Schlichthaerle, J. Cox, R. Jungmann°, F.U. Hartl°, M.S. Hipp°
    The nucleolus functions as a phase-separated protein quality compartment
    Science (2019). 365: 342-347
  • T. Schlichthaerle*, M.T. Strauss*, F. Schueder*, A. Auer, B. Nijmeijer, M. Kueblbeck, V.J. Sabinina, J.V. Thevathasan, J. Ries, J. Ellenberg, R. Jungmann
    Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT
    Angewandte Chemie Int. Ed. (2019). 58: 13004-13008
  • K. Cramer, A. Bolender, I. Stockmar, R. Jungmann, R. Kasper°, J.Y. Shin°
    Visualization of bacterial protein complexes labeled with fluorescent proteins and nanobody binders for STED microscopy
    International Journal of Molecular Sciences (2019). 20(14): 3376 
  • F. Stehr*, J. Stein*, F. Schueder, P. Schwille°, R. Jungmann°
    Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification
    Nature Communications (2019). 10: 1268
  • O.K. Wade*, J.B. Woehrstein*, P.C. Nickels*, S. Strauss*, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann
    124-color super-resolution imaging by engineering DNA-PAINT blinking kinetics
    Nano Letters (2019). 19(4): 2641-2646
  • T. Schlichthaerle*, M. Ganji*, A. Auer, O.K. Wade, R. Jungmann
    Bacterial‐derived antibody binders as small adapters for DNA‐PAINT  microscopy
    ChemBioChem (2019). 20(8): 1032-1038.
    See also: ChemBioTalents
  • G.C. Ortega*, S. Falk*, P.A. Johansson*, E. Peyre, L. Broic, S.K. Sahu, W. Hirst, T. Schlichthaerle, C. Romero, K. Draganova, S. Vinopal, K. Chinnappa, A. Gavranovic, T. Karakaya, T. Steininger, J. Merl-Pham, R. Feederle, W. Shao, S. Shi, S.M. Hauck, R. Jungmann, F. Bradke, V. Borrell, A. Geerlof, S. Reber, V.K. Tiwari, W.B. Huttner, M. Wilsch-Bräuninger, L. Nguyen, M. Götz
    The centrosome protein Akna regulates neurogenesis via microtubule  organization
    Nature (2019). 567: 113-117
  • S. Kempter, A. Khmelinskaia, M.T. Strauss, P. Schwille, R. Jungmann, T. Liedl, W. Bae
    Single Particle Tracking and Super-Resolution Imaging of Membrane-Assisted Stop-and-Go Diffusion and Lattice Assembly of DNA Origami
    ACS Nano (2019). 13(2): 996-1002



  • P. Blumhardt, J. Stein, J. Mücksch, F. Stehr, J. Bauer, R. Jungmann, P. Schwille 
    Photo-Induced Depletion of Binding Sites in DNA-PAINT Microscopy 
    Molecules (2018). 23(12): 3165 
  • N. Krahmer, B. Nafaji, F. Schueder, F. Quagliarini, M. Steger, S. Seitz, R. Kasper, F. Salinas, J. Cox, N.H. Uhlenhaut, T.C. Walther, R. Jungmann, A. Zeigerer, G.H.H. Borner, M. Mann 
    Organellar proteomics and phospho-proteomics reveal subcellular reorganization in diet-induced hepatic steatosis 
    Developmental Cell (2018). 47(2): 205-221 
  • N. Basnet, H. Nedozralova, A.H. Crevenna, S. Bodakuntla, T. Schlichthaerle, M. Taschner, G. Cardone, C. Janke, R. Jungmann, M.M. Magiera, C. Biertümpfel, N. Mizuno 
    Direct induction of microtubule branching by microtubule nucleation factor SSNA1 
    Nature Cell Biology (2018). 20: 1172-1180 
  • H. Heydarian, F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, B. Rieger 
    Template-free 2D particle fusion in localization microscopy 
    Nature Methods (2018). 15: 781–784 
    See also News & Views by Mark Bates  Nature Methods  (2018). 15: 771-772. 
  • A. Auer, T. Schlichthaerle, J.B. Woehrstein, F. Schueder, M.T. Strauss, H. Grabmayr, R. Jungmann 
    Nanometer-scale multiplexed super-resolution imaging with an economic 3D-DNA-PAINT microscope 
    ChemPhysChem (2018). 19(22): 3024-3034 
    See also 
  • S. Strauss, P.C. Nickels, M.T. Strauss, V.J. Sabinina, J. Ellenberg, J.D. Carter, S. Gupta, N. Janjic, R. Jungmann 
    Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging 
    Nature Methods (2018). 15: 685–688 
    See also News & Views by Regan P. Moore and Wesley R. Legant  Nature Methods  (2018). 15: 659-660. 
  • T. Schlichthaerle, A.S. Eklund, F. Schueder, M.T. Strauss, C. Tiede, A. Curd, J. Ries, M. Peckham, D.C. Tomlinson, R. Jungmann 
    Site-specific labeling of Affimers for DNA-PAINT microscopy 
    Angewandte Chemie Int. Ed(2018). 57: 11060-11063  
  • N.S. Deußner-Helfmann, A. Auer, M.T. Strauss, S. Malkusch, M.S. Dietz, H. Barth, R. Jungmann°, M. Heilemann° 
    Correlative Single-Molecule FRET and DNA-PAINT Imaging 
    Nano Letters (2018). 18(7): 4626-4630  
  • M.T. Strauss*, F. Schueder*, D. Haas*, P.C. Nickels, R. Jungmann 
    Quantifying absolute addressability in DNA origami with molecular resolution 
    Nature Communications (2018). 9: 1600 
  • J. Mücksch*, P. Blumhardt*, M.T. Strauss, E.P. Petrov, R. Jungmann, P. Schwille 
    Quantifying reversible surface binding via surface-integrated FCS 
    Nano Letters (2018). 18(5): 3185-3192 
  • S. Baenfer, D. Schneider, J. Dewes, M.T. Strauss, S. Freibert, T. Heimerl, U.G. Maier, H. Elsaesser, R. Jungmann, R. Jacob 
    A molecular mechanism to recruit galectin-3 into multivesicular bodies for polarized exosomal secretion  
    PNAS (2018). 115(19): E4396-E4405 
  • A. Kuzyk°, R. Jungmann°, G.P. Acuna°, N. Liu° 
    DNA origami route for nanophotonics 
    ACS Photonics (2018). 5: 1151-1163 



  • F. Schueder, J. Lara-Guitérrez, B.J. Beliveau, S.K. Saka, H.M. Sasaki, J.B. Woehrstein, M.T. Strauss, H. Grabmayr, P. Yin°, R. Jungmann° 
    Multiplexed 3D super-resolution imaging of whole cells using Spinning Disk Confocal Microscopy and DNA-PAINT 
    Nature Communications (2017). 8: 2090 
    Featured as Research Highlight in Nature Methods (2018). 15: 96-97. 
  • E. Graugnard, W.L. Hughes, R. Jungmann, M.A. Kostiainen, V. Linko 
    Nanometrology and super-resolution imaging with DNA 
    MRS Bulletin (2017). 42(12): 951-959 
  • A. Auer, M.T. Strauss, T. Schlichthaerle, R. Jungmann 
    Fast, background-free DNA-PAINT imaging using FRET-based probes 
    Nano Letters (2017). 17(10): 6428-6434 
  • L.L. Ong, N. Hanikel, O.K. Yaghi, C. Grun, M.T. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J.Y. Kishi, C.A. Myhrvold, A. Zhu, R. Jungmann, G. Bellot°, Y. Ke°, P. Yin°  
    Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components 
    Nature (2017). 552: 72-77 
  • J.L. Werbin, M.S. Avendano, V. Becker, R. Jungmann, P. Yin°, G. Danuser°, P. K. Sorger° 
    Multiplexed Exchange-PAINT imaging reveals ligand-dependent EGFR and Met interactions in the plasma membrane 
    Scientific Reports (2017). 7: 12150 
  • Y. Wang, J.B. Woehrstein, N. Donoghue, M. Dai, M.S. Avendano, R.C.J. Schackmann, J. Zoeller, S.S.H. Wang, P.W. Tillberg, D. Park, S.W. Lapan, E.S. Boyden, J.S. Brugge, P.S. Kaeser, G.M. Church, S.S. Agasti°, R. Jungmann°, P. Yin° 
    Rapid sequential in situ multiplexing with DNA-Exchange-Imaging in Neuronal Cells and Tissues 
    Nano Letters (2017). 17(10): 6131-6139 
  • J.B. Woehrstein*, M.T. Strauss*, L.L. Ong, B. Wei, D.Y. Zhang, R. Jungmann°, P. Yin° 
    Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA 
    Science Advances (2017). 3: e1602128 
  • J. Schnitzbauer*, M.T. Strauss*, T. Schlichthaerle, F. Schueder, R. Jungmann 
    Super-Resolution Microscopy with DNA-PAINT 
    Nature Protocols (2017). 12: 1198-1228 
  • F. Schueder, M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann 
    Universal Super-Resolution Multiplexing by DNA Exchange 
    Angewandte Chemie Int. Ed(2017). 56: 4052-4055 
  • S. S. Agasti*, Y. Wang*, F. Schueder, A. Sukumar, R. Jungmann°, P. Yin° 
    DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging 
    Chemical Science (2017). 8: 3080-3091



  • M. Dai, R. Jungmann, P. Yin 
    Optical imaging of individual biomolecules in densely packed clusters 
    Nature Nanotechnology (2016). 11(9): 798-807 
  • R. Jungmann 
    Overcoming obstacles in localization microscopy 
    Nature Methods (2016). 13: 301-302 
  • R. Jungmann*, M.S. Avendaño*, M. Dai, J.B. Woehrstein, S. S. Agasti, Z. Feiger, A. Rodal, P. Yin 
    Quantitative Super-Resolution Imaging with qPAINT 
    Nature Methods (2016). 13: 439-442 
  • T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, R. Jungmann 
    DNA nanotechnology and fluorescence applications 
    Current Opinion in Biotechnology (2016). 39: 41-47



  • T. Raschle, C. Lin, R. Jungmann, W.M. Shih, G. Wagner 
    Controlled co-reconstitution of multiple membrane proteins in lipid bilayer nanodiscs using DNA as a scaffold 
    ACS Chemical Biology (2015). 10(11): 2448-54 
  • J.B. Knudsen. L. Liu, A.L.B. Kodal, M. Madsen, Q. Li, J. Song, J.B. Woehrstein, S.F.J. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W.M. Shih. R. Jungmann, M. Dong°, K.V. Gothelf° 
    Routing of individual polymers in designed patterns 
    Nature Nanotechnology (2015). 11: 892-898 
  • M.B. Scheible, L.L. Ong, J.B. Woehstein, R. Jungmann, P. Yin, and F.C. Simmel 
    A compact DNA cube with side length 10 nm 
    Small (2015). 11(39): 5200-5 
  • B. Beliveau, A. Boettiger, M. Avendaño, R. Jungmann, R. McCole, E. Joyce, C. Kim-Kiselak, F. Bantignies, C. Fonseka, J. Erceg, M. Hannan, H. Hoang, D. Colognori, J. Lee, W. Shih, P. Yin, X. Zhuang, and C. Wu 
    Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes 
    Nature Communications (2015). 6: 1-13









  • E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, and F. C. Simmel 
Timing molecular motion and production with a synthetic transcriptional clock
    PNAS (2011). 108: E784-E793 
  • R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, and F. C. Simmel
    DNA origami-based nanoribbons: assembly, length distribution, and twist 
    Nanotechnology (2011). 22: 275301 
  • R. Jungmann, M. E. Szabo, G. Schitter, R. Tang, D. Vashishth, P. K. Hansma, and P. J. Thurner
    Local Strain and Damage Mapping in Single Trabeculae during Three-Point Bending Tests
    Journal of the Mechanical Behavior of Biomedical Materials (2011). 4(4): 523-534



  • R. Jungmann*, C. Steinhauer*, M. Scheible, A. Kuzyk, P. Tinnefeld°, and F. C. Simmel° 
Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami
    Nano Letters (2010). 10(11): 4756-4761
  • D. Hönig, J. DeRouchey, R. Jungmann, C. Koch, C. Plank, and J. O. Rädler
    Biophysical Characterization of Copolymer-Protected Gene Vectors
    Biomacromolecules (2010). 11(7): 1802-1809 
  • V. Tejedor, O. Bénichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber-Unkel, L.B. Oddershede, and R. Metzler
    Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method
    Biophysical Journal (2010). 98(7): 1364-1372



  • C. Steinhauer*, R. Jungmann*, T. Sobey, F. C. Simmel°, and P. Tinnefeld°
    DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy
    Angewandte Chemie Int. Ed(2009). 48(47): 8870-8873
  • P. J. Thurner, B. Erickson, P. Turner, R. Jungmann, J. Lelujian, A. Proctor, J. C. Weaver, G. Schitter, D. E. Morse, and P. K. Hansma 
The effect of NaF in vitro on the mechanical and material properties of trabecular and cortical bone
    Advanced Materials (2009). 21(4): 451-457



  • R. Jungmann, T. Liedl, T. L. Sobey, W. Shih, and F. C. Simmel 
Isothermal assembly of DNA origami structures using denaturing agents 
    Journal of the American Chemical Society (2008). 130: 10062-10063 
  • R. Jungmann, S. Renner, and F. C. Simmel 
From DNA nanotechnology to synthetic biology 
    HFSP Journal (2008). 2: 99-109 
  • P. K. Hansma, P. Turner, B. Drake, E. Yurtsev, A. Proctor, P. Mathews, J. Lelujian, C. Randall, J. Adams, R. Jungmann, F. Garza-de-Leon, G. Fantner, H. Mkrtchyan, M. Pontin, A. Weaver, M. B. Brown, N. Sahar, R. Rossello, and D. Kohn
    The bone diagnostic instrument II: Indentation distance increase 
    Review of Scientific Instruments (2008). 79(6): 064303-8



  • M. E. Lauer, R. Jungmann, J. H. Kindt, S. Magonov, J. H. Fuhrhop, E. Oroudjev, and H. G. Hansma
    Formation and Healing of Micrometer-Sized Channel Networks on Highly Mobile Au(111) Surfaces 
    Langmuir (2007). 23(10): 5459-5465 
  • P. J. Thurner, B. Erickson, R. Jungmann, Z. Schriock, J. C. Weaver, G. E. Fantner, G. Schitter, D. E. Morse, and P. K. Hansma 
High-speed photography of compressed human trabecular bone correlates whitening to microscopic damage
    Engineering Fracture Mechanics (2007). 74(12): 1928-1941


Book Chapters

  • M. Scheible, R. Jungmann, and F. C. Simmel 
Assembly and microscopic characterization of DNA origami structures 
Advances in Experimental Medicine and Biology (2012). 733: 87–96 
  • C. Steinhauer, C. Forthmann, R. Jungmann, J. Vogelsang, F. C. Simmel, and P. Tinnefeld
    Nanoscopy using localization and temporal separation of fluorescence from single molecules
    NATO Science for Peace and Security Series B: Physics and Biophysics (2011). Part 1, 87-106 
  • P. J. Thurner, E. Oroudjev, R. Jungmann, C. Kreutz, J. H. Kindt, G. Schitter, T. O. Okouneva, M. E. Lauer, G. E. Fantner, H. G. Hansma, and P. K. Hansma
    Imaging of Bone Ultrastructure using Atomic Force Microscopy 
    Modern Research and Educational Topics in Microscopy 3rd Edition (2007). Vol. 1, 37-48 
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