Mass spectrometry-based Proteomics
We develop algorithms and software for the analysis of vast amounts of mass spectral data that are produced in modern proteomics experiments. The MaxQuant software that we develop is one of the most widely used platforms in computational proteomics. It can be downloaded at  MaxQuant. more
Machine learning applications in computational biology
We apply conventional and deep machine learning to data analysis problems in proteomics and other high throughput data fields, utilize the flexibility and predictive strength of deep learning models as well as finding alternatives from conventional machine learning models. more
Posttranslational Modifications
One of our main interests lies in the interpretation of quantitative profiles of many proteins simultaneously. The Perseus software is designed to achieve this by integrating computational methods from bioinformatics, statistics and machine learning. more
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