Publications

Eduati, F.; Mangravite, L. M.; Wang, T.; Tang, H.; Bare, J. C.; Huang, R.; Norman, T.; Kellen, M.; Menden, M. P.; Yang, J. et al.; Zhan, X.; Zhong, R.; Xiao, G.; Xia, M.; Abdo, N.; Kosyk, O.; NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration, T.; Friend, S.; Dearry, A.; Simeonov, A.; Tice, R. R.; Rusyn, I.; Wright, F. A.; Stolovitzky, G.; Xie, Y.; Saez-Rodriguez, J.: Prediction of human population responses to toxic compounds by a collaborative competition. Nature Biotechnology 33 (9), pp. 933 - 940 (2015)

Grimm, D. G.; Azencott, C.; Aicheler, F.; Gieraths, U.; MacArthur, D. G.; Samocha, K. E.; Cooper, D. N.; Stenson, P. D.; Daly, M. J.; Smoller, J. W. et al.; Duncan, L. E.; Borgwardt, K. M.: The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity. Human Mutation 36 (5), pp. 513 - 523 (2015)

Hagmann, J.; Becker, C.; Müller, J.; Stegle, O.; Meyer, R. C.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLOS Genetics 11 (1), e1004920 (2015)

Llinares-López, F.; Grimm, D. G.; Bodenham, D. A.; Gieraths, U.; Sugiyama, M.; Rowan, B.; Borgwardt, K.: Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. Bioinformatics 31 (12), pp. i240 - i249 (2015)

Llinares-López, F.; Sugiyama, M.; Papaxanthos, L.; Borgwardt, K.: Fast and Memory-Efficient Significant Pattern Mining via Permutation Testing. KDD '15: The 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 725 - 734 (2015)

Roqueiro, D.; Witteveen, M. J.; Anttila, V.; Terwindt, G. M.; van den Maagdenberg, A.; Borgwardt, K.: In silico phenotyping via co-training for improved phenotype prediction from genotype. Bioinformatics 31 (12), pp. i303 - i310 (2015)

Sugiyama, M.; Borgwardt, K.: Halting in Random Walk Kernels. Advances in Neural Information Processing Systems 28 (NIPS 2015), pp. 1639 - 1647 (2015)

Sugiyama, M.; López, F. L.; Kasenburg, N.; Borgwardt, K.: Significant Subgraph Mining with Multiple Testing Correction. Proceedings of the 2015 SIAM International Conference on Data Mining (SDM), pp. 37 - 45 (2015)