Publications

Achlioptas, P.; Schölkopf, B.; Borgwardt, K.: Two-locus association mapping in subquadratic time. KDD '11: The 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 726 - 734 (2011)

Becker, C.; Hagmann, J.; Müller, J.; Koenig, D.; Stegle, O.; Borgwardt, K.; Weigel, D.: Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480 (7376), pp. 245 - 249 (2011)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; Koenig, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K. J.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Kam-Thong, T.; Czamara, D.; Tsuda, K.; Borgwardt, K.; Lewis, C. M.; Erhardt-Lehmann, A.; Hemmer, B.; Rieckmann, P.; Daake, M.; Weber, F. et al.; Wolf, C.; Ziegler, A.; Pütz, B.; Holsboer, F.; Schölkopf, B.; Müller-Myhsok, B.: EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. European Journal of Human Genetics 19 (4), pp. 465 - 471 (2011)

Kam-Thong, T.; Pütz, B.; Karbalai, N.; Müller−Myhsok, B.; Borgwardt, K.: Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. Bioinformatics 27 (13), pp. i214 - i221 (2011)

Li, L.; Rakitsch, B.; Borgwardt, K.: ccSVM: correcting Support Vector Machines for confounding factors in biological data classification. Bioinformatics 27 (13), pp. i342 - i348 (2011)

Shervashidze, N.; Schweitzer, P.; Leeuwen, E. J. v.; Mehlhorn, K.; Borgwardt, K.: Weisfeiler-Lehman Graph Kernels. Journal of Machine Learning Research 12 (77), pp. 2539 - 2561 (2011)

Stegle, O.; Lippert, C.; Mooij, J. M.; Lawrence, N.; Borgwardt, K.: Efficient inference in matrix-variate Gaussian models with iid observation noise. Advances in Neural Information Processing Systems 24 (NIPS 2011), pp. 630 - 638 (2011)

Borgwardt, K. M.: Kernel Methods in Bioinformatics. In: Handbook of Statistical Bioinformatics, pp. 317 - 334 (Eds. Lu, H. H.-S.; Schölkopf, B.; Zhao, H.). Springer, Berlin, Heidelberg (2011)