Publications
Journal Article (73)
1.
Journal Article
39 (Supplement_1), pp. 523 - 533 (2023)
Higher-order genetic interaction discovery with network-based biological priors. Bioinformatics 2.
Journal Article
networkGWAS: A network-based approach to discover genetic associations. Bioinformatics, btad370 (2023)
3.
Journal Article
39 (6), btad336 (2023)
Multi-modal deep learning improves grain yield prediction in wheat breeding by fusing genomics and phenomics. Bioinformatics 4.
Journal Article
39 (1), btac829 (2022)
SIMBSIG: similarity search and clustering for biobank-scale data. Bioinformatics 5.
Journal Article
2 (1), vbac071 (2022)
reComBat: batch-effect removal in large-scale multi-source gene-expression data integration. Bioinformatics Advances 6.
Journal Article
8 (1), veac002 (2022)
Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area. Virus Evolution 7.
Journal Article
38 (Supplement_1), pp. i101 - i108 (2022)
Prediction of recovery from multiple organ dysfunction syndrome in pediatric sepsis patients. Bioinformatics 8.
Journal Article
28 (1), pp. 164 - 174 (2022)
Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning. Nature Medicine 9.
Journal Article
8, 607952 (2021)
Early Prediction of Sepsis in the ICU Using Machine Learning: A Systematic Review. Frontiers in Medicine 10.
Journal Article
3 (4), pp. 209 - 210 (2021)
Ethnicity-based bias in clinical severity scores. The Lancet Digital Health 11.
Journal Article
12 (1), 3282 (2021)
RNA atlas of human bacterial pathogens uncovers stress dynamics linked to infection. Nature Communications 12.
Journal Article
335, 113505 (2021)
Using routine MRI data of depressed patients to predict individual responses to electroconvulsive therapy. Experimental Neurology 13.
Journal Article
37 (1), pp. 57 - 65 (2021)
Network-guided search for genetic heterogeneity between gene pairs. Bioinformatics 14.
Journal Article
22 (2), pp. 1515 - 1530 (2021)
Biological network analysis with deep learning. Briefings in Bioinformatics 15.
Journal Article
36 (Supplement_2), pp. i840 - i848 (2020)
Enhancing statistical power in temporal biomarker discovery through representative shapelet mining. Bioinformatics 16.
Journal Article
26 (10), pp. 1310 - 1317 (2020)
Machine learning for microbial identification and antimicrobial susceptibility testing on MALDI-TOF mass spectra: a systematic review. Clinical Microbiology and Infection 17.
Journal Article
48 (D1), pp. D1063 - D1068 (2020)
AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research 18.
Journal Article
13 (5-6), pp. 531 - 712 (2020)
Graph Kernels: State-of-the-Art and Future Challenges. Foundations and Trends® in Machine Learning 19.
Journal Article
270, pp. 1163 - 1167 (2020)
SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research. Studies in Health Technology and Informatics 20.
Journal Article
36 (Supplement_1), pp. i508 - i515 (2020)
Prediction of cancer driver genes through network-based moment propagation of mutation scores. Bioinformatics