Publications of M. Mann

Zougman, A.; Mann, M.; Wisniewski, J. R.: Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene. Nucleic Acids Research 39 (16), pp. 7103 - 7113 (2011)

Cox, J.; Michalski, A.; Mann, M.: Software Lock Mass by Two-Dimensional Minimization of Peptide Mass Errors. Journal of the American Society for Mass Spectrometry 22 (8), pp. 1373 - 1380 (2011)

Monetti, M.; Nagaraj, N.; Sharma, K.; Mann, M.: Large-scale phosphosite quantification in tissues by a spike-in SILAC method. Nature Methods 8 (8), pp. 655 - 659 (2011)

Thakur, S. S.; Geiger, T.; Chatterjee, B.; Bandilla, P.; Fröhlich, F.; Cox, J.; Mann, M.: Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation. Molecular & Cellular Proteomics 10 (8), M110.003699, pp. [1] - [9] (2011)

Krastev, D. B.; Slabicki, M.; Paszkowski-Rogacz, M.; Hubner, N. C.; Junqueira, M.; Shevchenko, A.; Mann, M.; Neugebauer, K. M.; Buchholz, F.: A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. Nature Cell Biology 13 (7), pp. 809 - 818 (2011)

Wisniewski, J. R.; Ostasiewicz, P.; Mann, M.: High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers. Journal of Proteome Research 10 (7), pp. 3040 - 3049 (2011)

Tatham, M. H.; Matic, I.; Mann, M.; Hay, R. T.: Comparative Proteomic Analysis Identifies a Role for SUMO in Protein Quality Control. Science Signaling 4 (178), rs4, pp. [1] - [12] (2011)

Nitzsche, A.; Paszkowski-Rogacz, M.; Matarese, F.; Janssen-Megens, E. M.; Hubner, N. C.; Schulz, H.; de Vries, I.; Ding, L.; Huebner, N.; Mann, M. et al.; Stunnenberg, H. G.; Buchholz, F.: RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity. PLoS ONE 6 (5), e19470, pp. [1] - [13] (2011)

Moyal, L.; Lerenthal, Y.; Gana-Weisz, M.; Mass, G.; So, S. R.; Wang, S. Y.; Eppink, B.; Chung, Y. M.; Shalev, G.; Shema, E. et al.; Shkedy, D.; Smorodinsky, N. I.; van Vliet, N.; Kuster, B.; Mann, M.; Ciechanover, A.; Dahm-Daphi, J.; Kanaar, R.; Hu, M. C. T.; Chen, D. J.; Oren, M.; Shiloh, Y.: Requirement of ATM-Dependent Monoubiquitylation of Histone H2B for Timely Repair of DNA Double-Strand Breaks (vol 41, pg 529, 2011). Molecular Cell 42 (1), p. 137 - 137 (2011)

Cox, J.; Neuhauser, N.; Michalski, A.; Scheltema, R. A.; Olsen, J. V.; Mann, M.: Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 10 (4), pp. 1794 - 1805 (2011)

Hubner, N. C.; Mann, M.: Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC). Methods 53 (4), pp. 453 - 459 (2011)

Michalski, A.; Cox, J.; Mann, M.: More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS. Journal of Proteome Research 10 (4), pp. 1785 - 1793 (2011)

Rigbolt, K. T. G.; Prokhorova, T. A.; Akimov, V.; Henningsen, J.; Johansen, P. T.; Kratchmarova, I.; Kassem, M.; Mann, M.; Olsen, J. V.; Blagoev, B.: System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation. Science Signaling 4 (164), rs3, pp. [1] - [17] (2011)

Wisniewski, J. R.; Zielinska, D. F.; Mann, M.: Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method. Analytical Biochemistry 410 (2), pp. 307 - 309 (2011)

Moyal, L.; Lerenthal, Y.; Gana-Weisz, M.; Mass, G.; So, S.; Wang, S. Y.; Eppink, B.; Chung, Y. M.; Shalev, G.; Shema, E. et al.; Shkedy, D.; Smorodinsky, N. I.; van Vliet, N.; Kuster, B.; Mann, M.; Ciechanover, A.; Dahm-Daphi, J.; Kanaar, R.; Hu, M. C. T.; Chen, D. J.; Oren, M.; Shiloh, Y.: Requirement of ATM-Dependent Monoubiquitylation of Histone H2B for Timely Repair of DNA Double-Strand Breaks. Molecular Cell 41 (5), pp. 529 - 542 (2011)

Mann, M.: John Bennett Fenn, 1917-2010 Obituary. Journal of the American Society for Mass Spectrometry 22 (3), pp. 602 - 603 (2011)

Olsen, J. V.; Mann, M.: Effective Representation and Storage of Mass Spectrometry-Based Proteomic Data Sets for the Scientific Community. Science Signaling 4 (160), pe7, pp. [1] - [4] (2011)

Mann, K.; Mann, M.: In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos. Proteome Science 9, 7, pp. [1] - [6] (2011)

Geiger, T.; Wisniewski, J. R.; Cox, J.; Zanivan, S.; Kruger, M.; Ishihama, Y.; Mann, M.: Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nature Protocols 6 (2), pp. 147 - 157 (2011)

Nagaraj, N.; Mann, M.: Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome. Journal of Proteome Research 10 (2), pp. 637 - 645 (2011)