Publications of M. Mann

Taylor, C. F.; Paton, N. W.; Lilley, K. S.; Binz, P. A.; Julian, R. K.; Jones, A. R.; Zhu, W. M.; Apweiler, R.; Aebersold, R.; Deutsch, E. W. et al.; Dunn, M. J.; Heck, A. J. R.; Leitner, A.; Macht, M.; Mann, M.; Martens, L.; Neubert, T. A.; Patterson, S. D.; Ping, P. P.; Seymour, S. L.; Souda, P.; Tsugita, A.; Vandekerckhove, J.; Vondriska, T. M.; Whitelegge, J. P.; Wilkins, M. R.; Xenarios, I.; Yates, J. R.; Hermjakob, H.: The minimum information about a proteomics experiment (MIAPE). Nature Biotechnology 25 (8), pp. 887 - 893 (2007)

Notenboom, V.; Hibbert, R.G.; van Rossum-Fikkert,, S.E.; Olsen, J. V.; Mann, M.; Sixma, T.K.: Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Nucleic Acids Research 35 (17), pp. 5819 - 5830 (2007)

Adachi, J.; Kumar, C.; Zhang, Y. L.; Mann, M.: In-depth analysis of the adipocyte proteome by mass spectrometry and bioinformatics. Molecular & Cellular Proteomics 6 (7), pp. 1257 - 1273 (2007)

Klug, H.; Knipscheer, P.; Olsen, J. V.; Nigam, N.; Maderbock, K.; Mann, M.; Sixma, T. K.; Pichler, A.: Analysis of E2 sumoylation in Saccharomyces cerevisiae. Abstracts of the 32nd FEBS Congress, C5-6, p. 218 - 218 (2007)

Knipscheer, P.; van Dijk, W. J.; Olsen, J. V.; Mann, M.; Sixma, T. K.: Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation. EMBO JOURNAL 26 (11), pp. 2797 - 2807 (2007)

Schandorff, S.; Olsen, J. V.; Bunkenborg, J.; Blagoev, B.; Zhang, Y.; Andersen, J. S.; Mann, M.: A mass spectrometry-friendly database for cSNP identification. NATURE METHODS 4 (6), pp. 465 - 466 (2007)

Dengjel, J.; Akimov, V.; Olsen, J. V.; Bunkenborg, J.; Mann, M.; Blagoev, B.; Andersen, J. S.: Quantitative proteomic assessment of very early cellular signaling events. Nature Biotechnology 25 (5), pp. 566 - 568 (2007)

Grgurevic, O.; Macek, B.; Erjavec, I.; Mann, M.; Vukicevic, S.: Urine release of systemically administered bone morphogenetic protein hybrid molecule. Journal of Nephrology 20 (3), pp. 311 - 319 (2007)

Lam, Y.W.; Lamond, A.I.; Mann, M.; Andersen, J.S.: Analysis of Nucleolar Protein Dynamics Reveals the Nuclear Degradation of Ribosomal Proteins. Current Biology 17 (9), pp. 749 - 760 (2007)

Zubarev, R.; Mann, M.: On the proper use of mass accuracy in proteomics. Molecular & Cellular Proteomics 6 (3), pp. 377 - 381 (2007)

Gnad, F.; Ren, S. B.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M.: PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology 8 (11), R250 (2007)

Klein, C.; Aivaliotis, M.; Olsen, J. V.; Falb, M.; Besir, H.; Scheffer, B.; Bisle, B.; Tebbe, A.; Konstantinidis, K.; Siedler, F. et al.; Pfeiffer, F.; Mann, M.; Oesterhelt, D.: The low molecular weight proteome of Halobacterium salinarum. Journal of Proteome Research 6 (4), pp. 1510 - 1518 (2007)

Macek, B.; Mijakovic, I.; Olsen, J. V.; Gnad, F.; Kumar, C.; Jensen, P.R.; Mann, M.: The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis. Molecular & Cellular Proteomics 6 (4), pp. 697 - 707 (2007)

Mann, K.; Olsen, J. V.; Macek, B.; Gnad, F.; Mann, M.: Phosphoproteins of the chicken eggshell calcified layer. PROTEOMICS 7 (1), pp. 106 - 115 (2007)

Olsen, J. V.; Nielsen, P. A.; Andersen, J. R.; Mann, M.; Wiśniewski, J. R.: Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: Mapping of neurotransmitter receptors and ion channels. Brain Research 1134 (1), pp. 95 - 106 (2007)

Ong, S. E.; Mann, M.: A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nature Protocols 1 (6), pp. 2650 - 2660 (2007)

Ong, S.E.; Mann, M.: Stable isotope labeling by amino acids in cell culture for quantitative proteomics. Methods in Molecular Biology 359, pp. 37 - 52 (2007)

Rappsilber, J.; Mann, M.; Ishihama, Y.: Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nature Protocols 2 (8), pp. 1896 - 1906 (2007)

Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M.: In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nature Protocols 1 (6), pp. 2856 - 2860 (2007)

Wisniewski, J. R.; Zougman, A.; Kruger, S.; Mann, M.: Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue. Molecular & Cellular Proteomics 6 (1), pp. 72 - 87 (2007)