Publications of Eri Sakata

Chen, X.; Sailer, C.; Kammer, K. M.; Fursch, J.; Eisele, M. R.; Sakata, E.; Pellarin, R.; Stengel, F.: Mono- and Intralink Filter (Mi-Filter) To Reduce False Identifications in Cross-Linking Mass Spectrometry Data. Analytical Chemistry 94, pp. 17751 - 17756 (2022)

Hung, K. Y. S.; Klumpe, S.; Eisele, M. R.; Elsasser, S.; Tian, G.; Sun, S.; Moroco, J. A.; Cheng, T. C.; Joshi, T.; Seibel, T. et al.; Van Dalen, D.; Feng, X.-H.; Lu, Y.; Ovaa, H.; Engen, J. R.; Lee, B.-H.; Rudack, T.; Sakata, E.; Finley, D.: Allosteric control of Ubp6 and the proteasome via a bidirectional switch. Nature Communications 13 (1), 838 (2022)

Sakata, E.; Eisele, M. R.; Baumeister, W.: Molecular and cellular dynamics of the 26S proteasome. Biochimica et Biophysica Acta-Proteins and Proteomics 1869 (3), 140583 (2021)

Eisele, M. R.; Reed, R. G.; Rudack, T.; Schweitzer, A.; Beck, F.; Nagy, I.; Pfeifer, G.; Plitzko, J. M.; Baumeister, W.; Tomko Jr., R. J. et al.; Sakata, E.: Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Cell Reports 24 (5), pp. 1301 - 1315.e5 (2018)

Wehmer, M.; Rudack, T.; Beck, F.; Aufderheide, A.; Pfeifer, G.; Plitzko, J. M.; Förster, F.; Schulten, K.; Baumeister, W.; Sakata, E.: Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proceedings of the National Academy of Sciences of the United States of America 114 (6), pp. 1305 - 1310 (2017)

Wang, X.; Cimermancic, P.; Yu, C.; Schweitzer, A.; Chopra, N.; Engel, J. L.; Greenberg, C.; Huszagh, A. S.; Beck, F.; Sakata, E. et al.; Yang, Y.; Novitsky, E. J.; Leitner, A.; Nanni, P.; Kahraman, A.; Guo, X.; Dixon, J. E.; Rychnovsky, S. D.; Aebersold, R.; Baumeister, W.; Sali, A.; Huang, L.: Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome. Molecular and Cellular Proteomics 16 (5), pp. 840 - 854 (2017)

Wehmer, M.; Sakata, E.: Recent advances in the structural biology of the 26S proteasome. International Journal of Biochemistry and Cell Biology 79, pp. 437 - 442 (2016)

Schweitzer, A.; Aufderheide, A.; Rudack, T.; Beck, F.; Pfeifer, G.; Plitzko, J. M.; Sakata, E.; Schulten, K.; Förster, F.; Baumeister, W.: Structure of the human 26S proteasome at a resolution of 3.9 angstrom. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 113 (28), pp. 7816 - 7821 (2016)

Aufderheide, A.; Beck, F.; Stengel, F.; Hartwig, M.; Schweitzer, A.; Pfeifer, G.; Goldberg, A. L.; Sakata, E.; Baumeister, W.; Förster, F.: Structural characterization of the interaction of Ubp6 with the 26S proteasome. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 112 (28), pp. 8626 - 8631 (2015)

Pack, C.-G.; Yukii, H.; Toh-e, A.; Kudo, T.; Tsuchiya, H.; Kaiho, A.; Sakata, E.; Murata, S.; Yokosawa, H.; Sako, Y. et al.; Baumeister, W.; Tanaka, K.; Saeki, Y.: Quantitative live-cell imaging reveals spatio-temporal dynamics and cytoplasmic assembly of the 26S proteasome. NATURE COMMUNICATIONS 5, 3396 (2014)

Fernandez-Busnadiego, R.; Asano, S.; Oprisoreanu, A.-M.; Sakata, E.; Doengi, M.; Kochovski, Z.; Zuemer, M.; Stein, V.; Schoch, S.; Baumeister, W. et al.; Lucic, V.: Cryo-electron tomography reveals a critical role of RIM1 alpha in synaptic vesicle tethering. JOURNAL OF CELL BIOLOGY 201 (5), pp. 725 - 740 (2013)

Bohn, S.; Sakata, E.; Beck, F.; Pathare, G. R.; Schnitger, J.; Nagy, I.; Baumeister, W.; Förster, F.: Localization of the regulatory particle subunit Semi in the 26S proteasome. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 435 (2), pp. 250 - 254 (2013)

Beck, F.; Unverdorben, P.; Bohn, S.; Schweitzer, A.; Pfeifer, G.; Sakata, E.; Nickell, S.; Plitzko, J. M.; Villa, E.; Baumeister, W. et al.; Förster, F.: Near-atomic resolution structural model of the yeast 26S proteasome. Proceedings of the National Academy of Sciences of the United States of America 109 (37), pp. 14870 - 14875 (2012)

Sakata, E.; Bohn, S.; Mihalache, O.; Kiss, P.; Beck, F.; Nagy, I.; Nickell, S.; Tanaka, K.; Saeki, Y.; Förster, F. et al.; Baumeister, W.: Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy. Proceedings of the National Academy of Sciences of the United States of America 109 (5), pp. 1479 - 1484 (2012)

Sakata, E.; Stengel, F.; Fukunaga, K.; Zhou, M.; Saeki, Y.; Förster, F.; Baumeister, W.; Tanaka, K.; Robinson, C. V.: The Catalytic Activity of Ubp6 Enhances Maturation of the Proteasomal Regulatory Particle. Molecular Cell 42 (5), pp. 637 - 649 (2011)

Bohn, S.; Beck, F.; Sakata, E.; Walzthoeni, T.; Beck, M.; Aebersold, R.; Förster, F.; Baumeister, W.; Nickell, S.: Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution. Proceedings of the National Academy of Sciences of the United States of America 107 (49), pp. 20992 - 20997 (2010)

Förster, F.; Sakata, E.: 26S Proteasome: Structure and Function. In: Encyclopedia of Biological Chemistry, 2nd Ed. Ed., pp. 595 - 600 (Eds. Lennarz, W. J.; Lane, M. D.). Elsevier, Amsterdam (2013)