Publications of Karsten Borgwardt

Drewe, P.; Stegle, O.; Hartmann, L.; Kahles, A.; Bohnert, R.; Wachter, A.; Borgwardt, K.; Rätsch, G.: Accurate detection of differential RNA processing. Nucleic Acids Research 41 (10), pp. 5189 - 5198 (2013)

Feragen, A.; Kasenburg, N.; Petersen, J.; de Bruijne, M.; Borgwardt, K.: Scalable kernels for graphs with continuous attributes. Advances in Neural Information Processing Systems 26 (NIPS 2013), pp. 216 - 224 (2013)

Fusi, N.; Lippert, C.; Borgwardt, K.; Lawrence, N. D.; Stegle, O.: Detecting regulatory gene–environment interactions with unmeasured environmental factors. Bioinformatics 29 (11), pp. 1382 - 1389 (2013)

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Accurate indel prediction using paired-end short reads. BMC Genomics 14 (1), 132 (2013)

Rakitsch, B.; Lippert, C.; Borgwardt, K.; Stegle, O.: It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals. Advances in Neural Information Processing Systems 26 (NIPS 2013), pp. 1466 - 1474 (2013)

Rakitsch, B.; Lippert, C.; Stegle, O.; Borgwardt, K.: A Lasso multi-marker mixed model for association mapping with population structure correction. Bioinformatics 29 (2), pp. 206 - 214 (2013)

Sugiyama, M.; Borgwardt, K.: Measuring Statistical Dependence via the Mutual Information Dimension. Proceedings of the 23rd International Joint Conference on Artificial Intelligence (IJCAI 2013), pp. 1692 - 1698 (2013)

Sugiyama, M.; Borgwardt, K.: Rapid Distance-Based Outlier Detection via Sampling. Advances in Neural Information Processing Systems 26 (NIPS 2013), pp. 467 - 475 (2013)

Gretton, A.; Borgwardt, K.; Rasch, M. J.; Schölkopf, B.; Smola, A.: A Kernel Two-Sample Test. Journal of Machine Learning Research 13 (25), pp. 723 - 773 (2012)

Kam-Thong, T.; Azencott, C.-A.; Cayton, L.; Pütz, B.; Altmann, A.; Karbalai, N.; Sämann, P. G.; Schölkopf, B.; Müller-Myhsok, B.; Borgwardt, K.: GLIDE: GPU-Based Linear Regression for Detection of Epistasis. Human Heredity 73 (4), pp. 220 - 236 (2012)

Karaletsos, T.; Stegle, O.; Dreyer, C.; Winn, J.; Borgwardt, K.: ShapePheno: unsupervised extraction of shape phenotypes from biological image collections. Bioinformatics 28 (7), pp. 1001 - 1008 (2012)

Song, L.; Smola, A.; Gretton, A.; Bedo, J.; Borgwardt, K.: Feature Selection via Dependence Maximization. Journal of Machine Learning Research 13 (47), pp. 1393 - 1434 (2012)

Windram, O.; Madhou, P.; McHattie, S.; Hill, C.; Hickman, R.; Cooke, E.; Jenkins, D. J.; Penfold, C. A.; Baxter, L.; Breeze, E. et al.; Kiddle, S. J.; Rhodes, J.; Atwell, S.; Kliebenstein, D. J.; Kim, Y.-s.; Stegle, O.; Borgwardt, K.; Zhang, C.; Tabrett, A.; Legaie, R.; Moore, J.; Finkenstadt, B.; Wild, D. L.; Mead, A.; Rand, D.; Beynon, J.; Ott, S.; Buchanan-Wollaston, V.; Denby, K. J.: Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis. The Plant Cell 24 (9), pp. 3530 - 3557 (2012)

Achlioptas, P.; Schölkopf, B.; Borgwardt, K.: Two-locus association mapping in subquadratic time. KDD '11: The 17th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 726 - 734 (2011)

Becker, C.; Hagmann, J.; Müller, J.; Koenig, D.; Stegle, O.; Borgwardt, K.; Weigel, D.: Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480 (7376), pp. 245 - 249 (2011)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; Koenig, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K. J.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Kam-Thong, T.; Czamara, D.; Tsuda, K.; Borgwardt, K.; Lewis, C. M.; Erhardt-Lehmann, A.; Hemmer, B.; Rieckmann, P.; Daake, M.; Weber, F. et al.; Wolf, C.; Ziegler, A.; Pütz, B.; Holsboer, F.; Schölkopf, B.; Müller-Myhsok, B.: EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. European Journal of Human Genetics 19 (4), pp. 465 - 471 (2011)

Kam-Thong, T.; Pütz, B.; Karbalai, N.; Müller−Myhsok, B.; Borgwardt, K.: Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. Bioinformatics 27 (13), pp. i214 - i221 (2011)

Li, L.; Rakitsch, B.; Borgwardt, K.: ccSVM: correcting Support Vector Machines for confounding factors in biological data classification. Bioinformatics 27 (13), pp. i342 - i348 (2011)

Shervashidze, N.; Schweitzer, P.; Leeuwen, E. J. v.; Mehlhorn, K.; Borgwardt, K.: Weisfeiler-Lehman Graph Kernels. Journal of Machine Learning Research 12 (77), pp. 2539 - 2561 (2011)