Publications of J. Cox
All genres
Journal Article (143)
101.
Journal Article
10 (9), M111.011015, pp. [1] - [11] (2011)
Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer. Molecular & Cellular Proteomics 102.
Journal Article
22 (8), pp. 1373 - 1380 (2011)
Software Lock Mass by Two-Dimensional Minimization of Peptide Mass Errors. Journal of the American Society for Mass Spectrometry 103.
Journal Article
10 (8), M110.003699, pp. [1] - [9] (2011)
Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation. Molecular & Cellular Proteomics 104.
Journal Article
10 (4), pp. 1794 - 1805 (2011)
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment. Journal of Proteome Research 105.
Journal Article
10 (4), pp. 1785 - 1793 (2011)
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS. Journal of Proteome Research 106.
Journal Article
6 (2), pp. 147 - 157 (2011)
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nature Protocols 107.
Journal Article
6, 450, pp. [1] - [9] (2010)
Defining the transcriptome and proteome in three functionally different human cell lines. Molecular Systems Biology 108.
Journal Article
9 (12), pp. 6786 - 6794 (2010)
Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation. Journal of Proteome Research 109.
Journal Article
9 (10), pp. 2252 - 2261 (2010)
Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation. Molecular & Cellular Proteomics 110.
Journal Article
6 (9), e1001090, pp. [1] - [11] (2010)
Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells. PLoS Genetics 111.
Journal Article
26 (13), pp. 1666 - 1668 (2010)
Predicting post-translational lysine acetylation using support vector machines. Bioinformatics 112.
Journal Article
9 (6), pp. 1047 - 1062 (2010)
An Integrated Phosphoproteomics Work Flow Reveals Extensive Network Regulation in Early Lysophosphatidic Acid Signaling. Molecular & Cellular Proteomics 113.
Journal Article
189 (4), pp. 739 - 754 (2010)
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions. Journal of Cell Biology 114.
Journal Article
7 (5), pp. 383 - 385 (2010)
Super-SILAC mix for quantitative proteomics of human tumor tissue. Nature Methods 115.
Journal Article
32 (2), pp. 279 - 289 (2010)
Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells. Immunity 116.
Journal Article
3 (104), ra3, pp. [1] - [15] (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis. Science Signaling 117.
Journal Article
9 (1), pp. 393 - 403 (2010)
MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics. Journal of Proteome Research 118.
Journal Article
36 (2), pp. 326 - 339 (2009)
Mislocalized Activation of Oncogenic RTKs Switches Downstream Signaling Outcomes. Molecular Cell 119.
Journal Article
9 (20), pp. 4642 - 4652 (2009)
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast. Proteomics 120.
Journal Article
6 (10), pp. 741 - 744 (2009)
Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nature Methods