Publications of J. Olsen

de Godoy, L.; Cox, J.; Olsen, J.; Bonaldi, T.; Kumar, C.; Hubner, N.; Macek, B.; Mann, M.: Expression proteomics at last; the determination of Proteome wide protein abundance changes by SILAC and high resolution mass Spectrometry. Molecular & Cellular Proteomics 6 (8 (Supplement)), 1.1, p. 18 - 18 (2007)

Notenboom, V.; Hibbert, R.G.; van Rossum-Fikkert,, S.E.; Olsen, J. V.; Mann, M.; Sixma, T.K.: Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Nucleic Acids Research 35 (17), pp. 5819 - 5830 (2007)

Klug, H.; Knipscheer, P.; Olsen, J. V.; Nigam, N.; Maderbock, K.; Mann, M.; Sixma, T. K.; Pichler, A.: Analysis of E2 sumoylation in Saccharomyces cerevisiae. Abstracts of the 32nd FEBS Congress, C5-6, p. 218 - 218 (2007)

Knipscheer, P.; van Dijk, W. J.; Olsen, J. V.; Mann, M.; Sixma, T. K.: Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation. EMBO JOURNAL 26 (11), pp. 2797 - 2807 (2007)

Schandorff, S.; Olsen, J. V.; Bunkenborg, J.; Blagoev, B.; Zhang, Y.; Andersen, J. S.; Mann, M.: A mass spectrometry-friendly database for cSNP identification. NATURE METHODS 4 (6), pp. 465 - 466 (2007)

Dengjel, J.; Akimov, V.; Olsen, J. V.; Bunkenborg, J.; Mann, M.; Blagoev, B.; Andersen, J. S.: Quantitative proteomic assessment of very early cellular signaling events. Nature Biotechnology 25 (5), pp. 566 - 568 (2007)

Gnad, F.; Ren, S. B.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M.: PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology 8 (11), R250 (2007)

Klein, C.; Aivaliotis, M.; Olsen, J. V.; Falb, M.; Besir, H.; Scheffer, B.; Bisle, B.; Tebbe, A.; Konstantinidis, K.; Siedler, F. et al.; Pfeiffer, F.; Mann, M.; Oesterhelt, D.: The low molecular weight proteome of Halobacterium salinarum. Journal of Proteome Research 6 (4), pp. 1510 - 1518 (2007)

Macek, B.; Mijakovic, I.; Olsen, J. V.; Gnad, F.; Kumar, C.; Jensen, P.R.; Mann, M.: The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis. Molecular & Cellular Proteomics 6 (4), pp. 697 - 707 (2007)

Mann, K.; Olsen, J. V.; Macek, B.; Gnad, F.; Mann, M.: Phosphoproteins of the chicken eggshell calcified layer. PROTEOMICS 7 (1), pp. 106 - 115 (2007)

Olsen, J. V.; Nielsen, P. A.; Andersen, J. R.; Mann, M.; Wiśniewski, J. R.: Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: Mapping of neurotransmitter receptors and ion channels. Brain Research 1134 (1), pp. 95 - 106 (2007)

Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M.: In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nature Protocols 1 (6), pp. 2856 - 2860 (2007)

Zhang, Y. L.; Zhang, Y.; Adachi, J.; Olsen, J. V.; Shi, R.; de Souza, G.; Pasini, E.; Foster, L. J.; Macek, B.; Zougman, A. et al.; Kumar, C.; Wisniewski, J. R.; Jun, W.; Mann, M.: MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research 35 (Sp. Iss. Sp. Iss. SI), pp. D771 - D779 (2007)

Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M.: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127 (3), pp. 635 - 648 (2006)

Klein, C.; Aivaliotis, M.; van Olsen, J.; Falb, M.; Besir, H.; Scheffer, B.; Bisle, B.; Tebbe, A.; Konstantinidis, K.; Siedler, F. et al.; Pfeiffer, F.; Mann, M.; Oesterhelt, D.: Proteome analysis of low molecular weight proteins in Halobacterium salinarum. Molecular & Cellular Proteomics 5 (10 Suppl. Suppl. S), p. S232 - S232 (2006)

de Godoy, L. M. F.; Olsen, J. V.; de Souza, G. A.; Li, G.; Mortensen, P.; Mann, M.: Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biology 7 (6), R50 (2006)

Mann, K.; Macek, B.; Olsen, J. V.: Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer. PROTEOMICS 6 (13), pp. 3801 - 3810 (2006)

Macek, B.; Waanders, L. F.; Olsen, J. V.; Mann, M.: Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer. Molecular & Cellular Proteomics 5 (5), pp. 949 - 958 (2006)

Adachi, J.; Kumar, C.; Zhang, Y. L.; Olsen, J. V.; Mann, M.: The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biology 7 (9), 80 (2006)

Zhang, Y.; Zhang, Y.; Adachi, J.; Olsen, J. V.; Shi, R.; de Souza, G.; Pasini, E.; Foster, L. J.; Macek, B.; Zougman, A. et al.; Kumar, C.; Wisniewski, J. R.; Jun, W.; Mann, M.: MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research 35, D771-9 (2006)