Publications of B. Macek

Journal Article (35)

21.
Journal Article
Macek, B.; Gnad, F.; Soufi, B.; Kumar, C.; Olsen, J. V.; Mijakovi, I.; Mann, M.: Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation. Molecular & Cellular Proteomics 7 [2008] (2), pp. 299 - 307 (2007)
22.
Journal Article
Matic, I.; van Hagen, M.; Schimmel, J.; Macek, B.; Ogg, S. C.; Tatham, M. H.; Hay, R. T.; Lamond, A. I.; Mann, M.; Vertegaal, A. C. O.: In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy. Molecular & Cellular Proteomics 7 [2008] (1), pp. 132 - 144 (2007)
23.
Journal Article
Olsen, J. V.; Macek, B.; Lange, O.; Makarov, A.; Horning, S.; Mann, M.: Higher-energy C-trap dissociation for peptide modification analysis. Nature Methods 4 (9), pp. 709 - 712 (2007)
24.
Journal Article
de Godoy, L.; Cox, J.; Olsen, J.; Bonaldi, T.; Kumar, C.; Hubner, N.; Macek, B.; Mann, M.: Expression proteomics at last; the determination of Proteome wide protein abundance changes by SILAC and high resolution mass Spectrometry. Molecular & Cellular Proteomics 6 (8 (Supplement)), 1.1, p. 18 - 18 (2007)
25.
Journal Article
Grgurevic, O.; Macek, B.; Erjavec, I.; Mann, M.; Vukicevic, S.: Urine release of systemically administered bone morphogenetic protein hybrid molecule. Journal of Nephrology 20 (3), pp. 311 - 319 (2007)
26.
Journal Article
Gnad, F.; Ren, S. B.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M.: PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology 8 (11), R250 (2007)
27.
Journal Article
Macek, B.; Mijakovic, I.; Olsen, J. V.; Gnad, F.; Kumar, C.; Jensen, P.R.; Mann, M.: The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis. Molecular & Cellular Proteomics 6 (4), pp. 697 - 707 (2007)
28.
Journal Article
Mann, K.; Olsen, J. V.; Macek, B.; Gnad, F.; Mann, M.: Phosphoproteins of the chicken eggshell calcified layer. PROTEOMICS 7 (1), pp. 106 - 115 (2007)
29.
Journal Article
Zhang, Y. L.; Zhang, Y.; Adachi, J.; Olsen, J. V.; Shi, R.; de Souza, G.; Pasini, E.; Foster, L. J.; Macek, B.; Zougman, A. et al.; Kumar, C.; Wisniewski, J. R.; Jun, W.; Mann, M.: MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research 35 (Sp. Iss. Sp. Iss. SI), pp. D771 - D779 (2007)
30.
Journal Article
Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M.: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127 (3), pp. 635 - 648 (2006)
31.
Journal Article
Mann, K.; Macek, B.; Olsen, J. V.: Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer. PROTEOMICS 6 (13), pp. 3801 - 3810 (2006)
32.
Journal Article
Macek, B.; Waanders, L. F.; Olsen, J. V.; Mann, M.: Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer. Molecular & Cellular Proteomics 5 (5), pp. 949 - 958 (2006)
33.
Journal Article
Mijakovic, I.; Petranovic, D.; Macek, B.; Cepo, T.; Mann, M.; Davies, J.; Jensen, P. R.; Vujaklija, D.: Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine. Nucleic Acids Research 34, pp. 1588 - 1596 (2006)
34.
Journal Article
Zhang, Y.; Zhang, Y.; Adachi, J.; Olsen, J. V.; Shi, R.; de Souza, G.; Pasini, E.; Foster, L. J.; Macek, B.; Zougman, A. et al.; Kumar, C.; Wisniewski, J. R.; Jun, W.; Mann, M.: MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research 35, D771-9 (2006)
35.
Journal Article
Olsen, J. V.; de Godoy, L. M. F.; Li, G.; Macek, B.; Mortensen, P.; Pesch, R.; Makarov, A.; Lange, O.; Horning, S.; Mann, M.: Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap. Molecular & Cellular Proteomics 4 (12), pp. 2010 - 2021 (2005)
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