Publications of J. Cox

Journal Article (133)

121.
Journal Article
Waanders, L. F.; Almeida, R.; Prosser, S.; Cox, J.; Eikel, D.; Allen, M. H.; Schultz, G. A.; Mann, M.: A novel chromatographic method allows on-line reanalysis of the proteome. Molecular & Cellular Proteomics 7 (8), pp. 1452 - 1459 (2008)
122.
Journal Article
Nielsen, M. L.; Vermeulen, M.; Bonaldi, T.; Cox, J.; Moroder, L.; Mann, M.: Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry. Nature Methods 5 (6), pp. 459 - 460 (2008)
123.
Journal Article
Olsen, J. V.; Butter, F.; Hubner, N.; Cox, J.; Hyman, A.; Mann, M.: SILAC based quantitative proteomics to determine specific protein-protein and protein-DNA interactions. FEBS Journal 275 (Suppl. Suppl. 1), p. 29 - 29 (2008)
124.
Journal Article
Graumann, J.; Hubner, N. C.; Kim, J.B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: SILAC-labeling and proteome quantitation of mouse embryonic stem cells to a depth of 5111 proteins. Special Issue: 8th International Symposium On Mass Spectrometry In The Life Sciences, pp. 672 - 683 (2008)
125.
Journal Article
Graumann, J.; Hubner, N. C.; Kim, J. B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Molecular & Cellular Proteomics 7 (4), pp. 672 - 683 (2008)
126.
Journal Article
Lu, A.; Waanders, L. F.; Almeida, R.; Li, G. Q.; Allen, M.; Cox, J.; Olsen, J. V.; Bonaldi, T.; Mann, M.: Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer. International Journal of Mass Spectrometry 268 (2-3), pp. 158 - 167 (2007)
127.
Journal Article
Cox, J.; Mann, M.: Is proteomics the new genomics? Cell 130 (3), pp. 395 - 398 (2007)
128.
Journal Article
de Godoy, L.; Cox, J.; Olsen, J.; Bonaldi, T.; Kumar, C.; Hubner, N.; Macek, B.; Mann, M.: Expression proteomics at last; the determination of Proteome wide protein abundance changes by SILAC and high resolution mass Spectrometry. Molecular & Cellular Proteomics 6 (8 (Supplement)), 1.1, p. 18 - 18 (2007)
129.
Journal Article
Shi, R.; Kumar, C.; Zougman, A.; Zhang, Y.; Podtelejnikov, A.; Cox, J.; Wisniewski, J. R.; Mann, M.: Analysis of the mouse liver proteome using advanced mass spectrometry. Journal of Proteome Research 6 (8), pp. 2963 - 2972 (2007)
130.
Journal Article
Smialowski, P.; Martin-Galiano, A. J.; Cox, J.; Frishman, D.: Predicting experimental properties of proteins from sequence by machine learning techniques. Current Protein & Peptide Science 8 (2), pp. 121 - 133 (2007)
131.
Journal Article
Gnad, F.; Ren, S. B.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M.: PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology 8 (11), R250 (2007)
132.
Journal Article
Pfleghaar, K.; Heubes, S.; Cox, J.; Stemmann, O.; Speicher, M. R.: Securin is not required for chromosomal stability in human cells. PLoS Biology 3 (12), e416, pp. 2127 - 2134 (2005)
133.
Journal Article
Pfleghaar, K.; Heubes, S.; Cox, J.; Stemmann, O.; Speicher, M. R.: Securin Is Not Required for Chromosomal Stability in Human Cells. PLoS Biology 3 (12), e416 (2005)

Book Chapter (4)

134.
Book Chapter
Tyanova, S.; Cox, J.: Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research. In: Cancer Systems Biology, pp. 133 - 148 (Ed. von Stechow, L.). Humana Press, New York, NY (2018)
135.
Book Chapter
Tyanova, S.; Mann, M.; Cox, J.: MaxQuant for In-Depth Analysis of Large SILAC Datasets. In: Methods in Molecular Biology; Vol. 1188, pp. 351 - 364. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
136.
Book Chapter
Hein, M. Y.; Sharma, K.; Cox, J.; Mann, M.: Proteomic Analysis of Cellular Systems. In: Handbook of Systems Biology: Concepts and Insights, pp. 3 - 25 (Eds. Walhout, M.; Vidal, M.; Dekker, J.). Academic Press, New York (2013)
137.
Book Chapter
Cox, J.; Mann, M.: Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology. In: ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80, Vol. 80, pp. 273 - 299 (Ed. Kornberg, R. D. e. a.). ANNUAL REVIEWS, PALO ALTO (2011)

Meeting Abstract (4)

138.
Meeting Abstract
Mattner, L. F.; Rudolph, J. D.; Cox, J.; Schiller, H. B.: Deciphering the functions of phosphoproteomics signaling networks in human lung fibroblasts upon rigidity sensing. In Wound repair and regeneration, 28 (2), p. A8 - A8. WILEY, 111 RIVER ST, HOBOKEN 07030-5774, NJ USA (2020)
139.
Meeting Abstract
Braeunlein, E.; Lupoli, G.; Pecoraro, M.; Engleitner, T.; Stelzl, A.; Boxberg, M.; Sinitcyn, P.; Cox, J.; Steiger, K.; Weichert, W. et al.; Rad, R.; Mann, M.; Krackhardt, A. M.: Spatial and temporal monitoring of neoantigen-specific T cells and T-cell receptors in a melanoma patient with secondary immune resistance to Ipilimumab. In Oncology Research and Treatment, 41 (Suppl. 4), pp. 85 - 86. Jahrestagung der Deutschen, Österreichischen und Schweizerischen Gesellschaften für Hämatologie und Medizinische Onkologie, Wien, September 28, 2018 - October 02, 2018. Karger, Basel (2018)
140.
Meeting Abstract
Mann, M.; Cosica, F.; Kulak, N.; Pichler, G.; Tyanova, S.; Shaman, K.; Wisniewski, J.; Cox, J.: Recent developments in the technology of mass spectrometry-based clinical proteomics. In EUROPEAN JOURNAL OF CANCER, 50 (Suppl. 5), 37, p. S10 - S10. ELSEVIER SCI LTD, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND (2014)
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