Search results

Alkhalaf, L. M.; Arrowsmith, C.; Balskus, E. P.; Bergamini, G.; Bhandari, R.; Chang, C. J.; Chen, P.; Chen, X.; Ciulli, A.; Cricco, J. A. et al.; Davis, B. G.; Delbianco, M.; Dudareva, N.; Dueber, E.; Ferguson, F.; de Giuseppe, P. O.; Hamachi, I.; Hammond, M. C.; Hatzios, S. K.; Do Heo, W.; Janet, J. P.; Kamat, S. S.; Knapp, S.; Krishnan, Y.; Lang, K.; Laraia, L.; Leveson-Gower, R. B.; Li, X. D.; Liu, D. R.; Liu, M.-F.; London, N.; Mahanta, N.; Mayor-Ruiz, C.; Muir, T.; Murakami, M. T.; Rhee, H.-W.; Robers, M.; Satz, A.; Schulman, B. A.; Shen, B.; Shoichet, B.; Strauss, E.; Suzuki, T.; Tiwary, P.; Waldmann, H.; Ward, T. R.; Weeks, A.; Weerapana, E.; Winter, G.: Thoughts for the future. Nature Chemical Biology 21, pp. 6 - 15 (2025)

Bone, R. A.; Lowndes, M. P.; Raineri, S.; Riveiro, A.; Lundregan, S. L.; Dall, M.; Sulek, K.; Romero, J. A. H.; Malzard, L.; Koigi, S. et al.; Heckenbach, I. J.; Solis-Mezarino, V.; Voelker-Albert, M.; Vasilopoulou, C.; Meier, F.; Trusina, A.; Mann, M.; Nielsen, M.; Treebak, J. T.; Brickman, J. M.: Altering metabolism programs cell identity via NAD+-dependent deacetylation. The EMBO Journal (2025)

Chen, D.; Schulz, T.; Borgwardt, K.: Learning Long Range Dependencies on Graphs via Random Walks. 13th International Conference on Learning Representations (ICLR 2025) (accepted) (2025)

Cimen, C.; Siemer, P.; Sattler, J.; Voss, A.; Berends, M. S.; Hamprecht, A.: Performance of disk diffusion, gradient test, and VITEK 2 for carbapenem susceptibility testing in OXA-48-like carbapenemase-producing Enterobacterales: a comparative study. Journal of Clinical Microbiology, e01893-24 (2025)

Corvelo Benz, N.; Miranda, L.; Chen, D.; Sattler, J.; Borgwardt, K.: Antimicrobial drug recommendation from MALDI-TOF mass spectrometry with statistical guarantees using conformal prediction. 29th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2025) (accepted) (2025)

Fujita-Fujiharu, Y.; Hu, S. F.; Hirabayashi, A.; Takamatsu, Y.; Ng, Y. N.; Houri, K.; Muramoto, Y.; Nakano, M.; Sugita, Y.; Noda, T.: Structural basis for Ebola virus nucleocapsid assembly and function regulated by VP24. Nature Communications 16 (1), 2171 (2025)

Hama, N.; Aoki, S.; Chen, C.-B.; Hasegawa, A.; Ogawa, Y.; Vocanson, M.; Asada, H.; Chu, C.-Y.; Lan, C.-C. E.; Dodiuk-Gad, R. P. et al.; Fujiyama, T.; Hsieh, T.-S.; Ito, K.; Jerschow, E.; Mizukawa, Y.; Nakajima, S.; Nakamura, K.; Nicolas, J.-F.; Satoh, T. K.; Shiohara, T.; Takahashi, H.; Tohyama, M.; Ueda, T.; Ura, K.; Watanabe, H.; Yamaguchi, Y.; Nordmann, T. M.; Chung, W.-H.; Naisbitt, D.; Pincelli, C.; Pichler, W. J.; French, L. E.; Phillips, E.; Abe, R.: Recent progress in Stevens-Johnson syndrome/toxic epidermal necrolysis: Diagnostic criteria, pathogenesis and treatment. British Journal of Dermatology 192 (1), pp. 9 - 18 (2025)

Hernandez, B. S.; Lubenia, P. V. N.; Mendoza, E. R.: Equilibria Decomposition-Based Comparison of Reaction Networks of Wnt Signaling. Match-Communications in Mathematical and in Computer Chemistry 93 (2), pp. 291 - 318 (2025)

Honsa, M.; Pachmayr, I.; Heinze, L.; Bas, L.; Masullo, L. A.; Kwon, J.; Perovic, A.; Schulman, B. A.; Jungmann, R.: Imaging Ligand-Receptor Interactions at Single-Protein Resolution with DNA-PAINT. Small Methods, 2401799 (2025)

Keidel, A.; Long, C. L.; Iwasa, J.; Conti, E.: RNA-Degrading Exosome Complexes: Molecular Mechanisms and Structural Insights. Annual Review of Cell and Developmental Biology (2025)

Klebl, D. P.; McMillan, S. N.; Risi, C.; Forgacs, E.; Virok, B.; Atherton, J. L.; Harris, S. A.; Stofella, M.; Winkelmann, D. A.; Sobott, F. et al.; Galkin, V. E.; Knight, P. J.; Muench, S. P.; Scarff, C. A.; White, H. D.: Swinging lever mechanism of myosin directly shown by time-resolved cryo-EM. Nature (2025)

Kravchenko, P.; Tachibana, K.: Rise and SINE: Roles of transcription factors and retrotransposons in zygotic genome activation. Nature Reviews Molecular Cell Biology 26 (1), pp. 68 - 79 (2025)

Pellizzoni, P.; Schulz, T.; Chen, D.; Borgwardt, K.: Graph Neural Networks Can (Often) Count Substructures. 13th International Conference on Learning Representations (ICLR 2025) (accepted) (2025)

Perez-Riverol, Y.; Bittremieux, W.; Noble, W. S.; Martens, L.; Bilbao, A.; Lazear, M. R.; Gruening, B.; Katz, D. S.; MacCoss, M. J.; Dai, C. et al.; Eng, J. K.; Bouwmeester, R.; Shortreed, M. R.; Audain, E.; Sachsenberg, T.; Van Goey, J.; Wallmann, G.; Wen, B.; Kall, L.; Fondrie, W. E.: Open-Source and FAIR Research Software for Proteomics. Journal of Proteome Research 24 (5), pp. 2222 - 2234 (2025)

Rosenberger, F. A.; Mädler, S. C.; Thorhauge, K. H.; Steigerwald, S.; Fromme, M.; Lebedev, M.; Weiss, C. A. M.; Oeller, M.; Wahle, M.; Metousis, A. et al.; Zwiebel, M.; Schmacke, N. A.; Detlefsen, S.; Boor, P.; Fabian, O.; Frankova, S.; Krag, A.; Strnad, P.; Mann, M.: Deep Visual Proteomics maps proteotoxicity in a genetic liver disease. Nature (2025)

Stubhan, S.; Baptist, A. V.; Korosy, C.; Narducci, A.; Moya Munoz, G. G.; Wendler, N.; Lak, A.; Sztucki, M.; Cordes, T.; Lipfert, J.: Determination of absolute intramolecular distances in proteins using anomalous X-ray scattering interferometry. Nanoscale 17 (6), pp. 3322 - 3330 (2025)

Weck, J. M.; Nair, R.; Kesici, M.-Z.; Shang, X.; Gavrilovic, S.; Monzel, C.; Heuer-Jungemann, A.: Effects of DNA Origami-Based Nanoagent Design on Apoptosis Induction in a Large 3D Cancer Spheroid Model. Small, 2502490 (2025)

El Fissi, N.; Rosenberger, F. A.; Chang, K.; Wilhalm, A.; Barton-Owen, T.; Hansen, F. M.; Golder, Z.; Alsina, D.; Wedell, A.; Mann, M. et al.; Chinnery, P. F.; Freyer, C.; Wredenberg, A.: Preventing excessive autophagy protects from the pathology of mtDNA mutations in Drosophila melanogaster. Nature Communications 15 (1), 10719 (2024)

Ke, Z.; Peacock, T. P.; Brown, J. C.; Sheppard, C. M.; Croll, T. I.; Kotecha, A.; Goldhill, D. H.; Barclay, W. S.; Briggs, J. A. G.: Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants. The EMBO Journal 43 (24), pp. 6469 - 6495 (2024)

He, F.; Aebersold, R.; Baker, M. S.; Bian, X.; Bo, X.; Chan, D. W.; Chang, C.; Chen, L.; Chen, X.; Chen, Y.-J. et al.; Cheng, H.; Collins, B. C.; Corrales, F.; Cox, J.; E, W.; Van Eyk, J. E.; Fan, J.; Faridi, P.; Figeys, D.; Gao, G. F.; Gao, W.; Gao, Z.-H.; Goda, K.; Goh, W. W. B.; Gu, D.; Guo, C.; Guo, T.; He, Y.; Heck, A. J. R.; Hermjakob, H.; Hunter, T.; Iyer, N. G.; Jiang, Y.; Jimenez, C. R.; Joshi, L.; Kelleher, N. L.; Li, M.; Li, Y.; Lin, Q.; Liu, C. H.; Liu, F.; Liu, G.-H.; Liu, Y.; Liu, Z.; Low, T. Y.; Lu, B.; Mann, M.; Meng, A.; Moritz, R. L.; Nice, E.; Ning, G.; Omenn, G. S.; Overall, C. M.; Palmisano, G.; Peng, Y.; Pineau, C.; Poon, T. C. W.; Purcell, A. W.; Qiao, J.; Reddel, R. R.; Robinson, P. J.; Roncada, P.; Sander, C.; Sha, J.; Song, E.; Srivastava, S.; Sun, A.; Sze, S. K.; Tang, C.; Tang, L.; Tian, R.; Vizcaíno, J. A.; Wang, C.; Wang, C.; Wang, X.; Wang, X.; Wang, Y.; Weiss, T.; Wilhelm, M.; Winkler, R.; Wollscheid, B.; Wong, L.; Xie, L.; Xie, W.; Xu, T.; Xu, T.; Yan, L.; Yang, J.; Yang, X.; Yates, J.; Yun, T.; Zhai, Q.; Zhang, B.; Zhang, H.; Zhang, L.; Zhang, L.; Zhang, P.; Zhang, Y.; Zheng, Y. Z.; Zhong, Q.; Zhu, Y.; Chan, D. W.; Tan, C. S. H.; E, W.; Van Eyk, J. E.; Gao, M.; Gao, Q.; Gao, Y.; Guo, X.; He, J.; He, J.; He, Q.-Y.; Hou, J.; Huang, C.; Jia, C.; Kuster, B.; Li, C.; Li, D.; Li, Y.; Li, Y.; Liu, S.; Liu, X.; Liu, Y.; Liu, Z.; Lu, H.; Nie, Y.; Okada, M.; Qian, G.; Qin, H.; Rao, Y.; Rao, Z.; Ren, X.; Ren, Y.; Shen, F.; Shen, L.; Su, S.; Tan, M.; Tang, B. Z.; Tao, S.-C.; Wang, J.; Wang, T.; Wei, L.; Wong, C. C. L.; Xie, X. S.; Xu, L.; Xu, P.; Xu, T.; Yang, H.; Yang, J.; Ye, M.; Ying, W.; Yu, X.; Yuan, Y.; Zeng, Q.; Zhan, Q.; Zhang, X.; Zhang, X.; Zhang, Y.; Zhong, N.-S.; Zhou, F.; Zhu, Y.; Zhang, Z.: π-HuB: The proteomic navigator of the human body. Nature 636 (8402), pp. 322 - 331 (2024)