Search results

Behrens, A.; Nedialkova, D. D.: Experimental and computational workflow for the analysis of tRNA pools from eukaryotic cells by mim-tRNAseq. STAR Protocols 3 (1), 101579 (2022)

Huisjes, N. M.; Retzer, T. M.; Scherr, M. J.; Agarwal, R.; Rajappa, L.; Safaric, B.; Minnen, A.; Duderstadt, K. E.: Mars, a molecule archive suite for reproducible analysis and reporting of single-molecule properties from bioimages. eLife 11, e75899 (2022)

Aumer, T.; Gremmelmaier, C. B.; Runtsch, L. S.; Pforr, J. C.; Yesiltac, N.; Kaiser, S.; Traube, F. R.: Comprehensive comparison between azacytidine and decitabine treatment in an acute myeloid leukemia cell line. Clinical Epigenetics 14 (1), 113 (2022)

Jiang, W.; Wagner, J.; Du, W.; Plitzko, J.; Baumeister, W.; Beck, F.; Guo, Q.: A transformation clustering algorithm and its application in polyribosomes structural profiling. Nucleic Acids Research 50 (16), pp. 9001 - 9011 (2022)

Skowronek, P.; Thielert, M.; Voytik, E.; Tanzer, M. C.; Hansen, F. M.; Willems, S.; Karayel, O.; Brunner, A.-D.; Meier, F.; Mann, M.: Rapid and in-depth coverage of the (phospho-) proteome with deep libraries and optimal window design for dia-PASEF. Molecular & Cellular Proteomics 21 (9), 100279 (2022)

Hopf, L. V. M.; Baek, K.; Klügel, M.; von Gronau, S.; Xiong, Y.; Schulman, B. A.: Structure of CRL7(FBXW)(8) reveals coupling with CUL1-RBX1/ROC1 for multi-cullin-RING E3-catalyzed ubiquitin ligation. Nature Structural & Molecular Biology 29 (9), pp. 854 - 862 (2022)

Lamm, L.; Righetto, R. D.; Wietrzynski, W.; Pöge, M.; Martinez-Sanchez, A.; Peng, T.; Engel, B. D.: MemBrain: A deep learning-aided pipeline for detection of membrane proteins in Cryo-electron tomograms. Computer Methods and Programs in Biomedicine 224, 106990 (2022)

Meissner, F.; Geddes-McAlister, J.; Mann, M.; Bantscheff, M.: The emerging role of mass spectrometry-based proteomics in drug discovery. Nature Reviews Drug Discovery 21 (9), pp. 637 - 654 (2022)

Hajarolasvadi, N.; Sunkara, V.; Khavnekar, S.; Beck, F.; Brandt, R.; Baum, D.: Volumetric macromolecule identification in cryo-electron tomograms using capsule networks. BMC Bioinformatics 23 (1), 360 (2022)

Stolz, P.; Mantero, A. S.; Tvardovskiy, A.; Ugur, E.; Wange, L. E.; Mulholland, C. B.; Cheng, Y.; Wierer, M.; Enard, W.; Schneider, R. et al.; Bartke, T.; Leonhardt, H.; Elsasser, S. J.; Bultmann, S.: TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation. Nucleic Acids Research 50 (15), pp. 8491 - 8511 (2022)

Sirinian, C.; Papanastasiou, A. D.; Karayel, O.; Degn, S. E.; Peroukidis, S.; Chaniotis, D.; Nonni, A.; Repanti, M.; Kriegsmann, M.; Makatsoris, T. et al.; Koutras, A.; Mann, M.; Kalofonos, H. P.: Analysis of RANK-c interaction partners identifies TRAF3 as a critical regulator of breast cancer aggressiveness. Neoplasia 33, 100836 (2022)

Sycheva, A. L. L.; Komech, E. A. A.; Pogorelyy, M. V. V.; Minervina, A. A. A.; Urazbakhtin, S. Z.; Salnikova, M. A. A.; Vorovitch, M. F. F.; Kopantzev, E. P. P.; Zvyagin, I. V. V.; Komkov, A. Y. Y. et al.; Mamedov, I. Z. Z.; Lebedev, Y. B. B.: Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response. Frontiers in immunology 13, 970285 (2022)

Mehta, S.; Buyanbat, A.; Kai, Y.; Karayel, O.; Goldman, S. R.; Seruggia, D.; Zhang, K.; Fujiwara, Y.; Donovan, K. A.; Zhu, Q. et al.; Yang, H.; Nabet, B.; Gray, N. S.; Mann, M.; Fischer, E. S.; Adelman, K.; Orkin, S. H.: Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degra-dation of BCL11A protein in erythroid cells. Cell Chemical Biology 29 (8), pp. 1273 - 1287 (2022)

Sun, H.; Jia, H.; Kendall, O.; Dragelj, J.; Kubyshkin, V.; Baumann, T.; Mroginski, M.-A.; Schwille, P.; Budisa, N.: Halogenation of tyrosine perturbs large-scale protein self-organization. Nature Communications 13 (1), 4843 (2022)

Lozada, N. J. H.; Hong, B.; Wood, J. C.; Caputi, L.; Basquin, J.; Chuang, L.; Kunert, M.; Lopez, C. E. R.; Langley, C.; Zhao, D. et al.; Buell, C. R.; Lichman, B. R.; O'Connor, S. E.: Biocatalytic routes to stereo-divergent iridoids. Nature Communications 13 (1), 4718 (2022)

Lucic, V.: Computational methods for ultrastructural analysis of synaptic complexes. Current Opinion in Neurobiology 76, 102611 (2022)

Vorwerk, J.; Sun, K.; Frank, D.; Neumann, F.; Hueve, J.; Budde, P. M.; Liu, L.; Xie, X.; Patnana, P. K.; Ahmed, H. M. M. et al.; Opalka, B.; Lenz, G.; Jayavelu, A. K.; Khandanpour, C.: Presence of the GFI1-36N single nucleotide polymorphism enhances the response of MLL-AF9 leukemic cells to CDK4/6 inhibition. Frontiers in Oncology 12, 903691 (2022)

Mund, A.; Coscia, F.; Kriston, A.; Hollandi, R.; Kovacs, F.; Brunner, A. D.; Migh, E.; Schweizer, L.; Santos, A.; Bzorek, M. et al.; Naimy, S.; Rahbek-Gjerdrum, L. M.; Dyring-Andersen, B.; Bulkescher, J.; Lukas, C.; Eckert, M. A.; Lengyel, E.; Gnann, C.; Lundberg, E.; Horvath, P.; Mann, M.: Deep Visual Proteomics defines single-cell identity and heterogeneity. Nature Biotechnology 40, pp. 1231 - 1240 (2022)

Schneider, J.; Jasnin, M.: Capturing actin assemblies in cells using in situ cryo-electron tomography. European Journal of Cell Biology 101 (3), 151224 (2022)

Sevilla-Movilla, S.; Fuentes, P.; Rodriguez-Garcia, Y.; Arellano-Sanchez, N.; Krenn, P. W.; Isern de Val, S.; Montero-Herradon, S.; Garcia-Ceca, J.; Burdiel-Herencia, V.; Gardeta, S. R. et al.; Aguilera-Montilla, N.; Barrio-Alonso, C.; Crainiciuc, G.; Bouvard, D.; Garcia-Pardo, A.; Zapata, A. G.; Hidalgo, A.; Fässler, R.; Carrasco, Y. R.; Toribio, M. L.; Teixido, J.: ICAP-1 loss impairs CD8(+) thymocyte development and leads to reduced marginal zone B cells in mice. European Journal of Immunology 52 (8), pp. 1228 - 1242 (2022)