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Journal Article (28)

  1. 1.
    Journal Article
    Tain, L. S.; Sehlke, R.; Jain, C.; Chokkalingam, M.; Nagaraj, N.; Essers, P.; Rassner, M.; Groenke, S.; Froelich, J.; Dieterich, C. et al.; Mann, M.; Alic, N.; Beyer, A.; Partridge, L.: A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Molecular Systems Biology 13 (9), 939 (2017)
  2. 2.
    Journal Article
    Murgia, M.; Toniolo, L.; Nagaraj, N.; Ciciliot, S.; Vindigni, V.; Schiaffino, S.; Reggiani, C.; Mann, M.: Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging. Cell Reports 19 (11), pp. 2396 - 2409 (2017)
  3. 3.
    Journal Article
    Furlan, S.; Mosole, S.; Murgia, M.; Nagaraj, N.; Argenton, F.; Volpe, P.; Nori, A.: Calsequestrins in skeletal and cardiac muscle from adult Danio rerio. Journal of muscle research and cell motility, [Epub ahead of print] (2015)
  4. 4.
    Journal Article
    Fortuin, S.; Tomazella, G. G.; Nagaraj, N.; Sampson, S. L.; van Pittius, N. C. G.; Soares, N. C.; Wiker, H. G.; de Souza, G. A.; Warren, R. M.: Phosphoproteomics analysis of a clinical Mycobacterium tuberculosis Beijing isolate: expanding the mycobacterial phosphoproteome catalog. FRONTIERS IN MICROBIOLOGY 6, 6 (2015)
  5. 5.
    Journal Article
    Bauer, C.; Goebel, K.; Nagaraj, N.; Colantuoni, C.; Wang, M.; Mueller, U.; Kremmer, E.; Rottach, A.; Leonhardt, H.: Phosphorylation of TET Proteins Is Regulated via O-GlcNAcylation by the O-Linked N-Acetylglucosamine Transferase (OGT). JOURNAL OF BIOLOGICAL CHEMISTRY 290 (8), pp. 4801 - 4812 (2015)
  6. 6.
    Journal Article
    Deshmukh, A. S.; Murgia, M.; Nagaraj, N.; Treebak, J. T.; Cox, J.; Mann, M.: Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors. MOLECULAR & CELLULAR PROTEOMICS 14 (4), pp. 841 - 853 (2015)
  7. 7.
    Journal Article
    Hein, M. Y.; Hubner, N. C.; Poser, I.; Cox, J.; Nagaraj, N.; Toyoda, Y.; Gak, I. A.; Weisswange, I.; Mansfeld, J.; Buchholz, F. et al.; Hyman, A. A.; Mann, M.: A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances. CELL 163 (3), pp. 712 - 723 (2015)
  8. 8.
    Journal Article
    Inacio, P.; Zuzarte-Luis, V.; Ruivo, M. T. G.; Falkard, B.; Nagaraj, N.; Rooijers, K.; Mann, M.; Mair, G.; Fidock, D. A.; Mota, M. M.: Parasite-induced ER stress response in hepatocytes facilitates Plasmodium liver stage infection. EMBO REPORTS 16 (8), pp. 955 - 964 (2015)
  9. 9.
    Journal Article
    Murgia, M.; Nagaraj, N.; Deshmukh, A. S.; Zeiler, M.; Cancellara, P.; Moretti, I.; Reggiani, C.; Schiaffino, S.; Mann, M.: Single muscle fiber proteomics reveals unexpected mitochondrial specialization. EMBO reports 16 (3), pp. 387 - 395 (2015)
  10. 10.
    Journal Article
    Räschle, M.; Smeenk, G.; Hansen, R. K.; Temu, T.; Oka, Y.; Hein, M. Y.; Nagaraj, N.; Long, D. T.; Walter, J. C.; Hofmann, K. et al.; Storchova, Z.; Cox, J.; Bekker-Jensen, S.; Mailand, N.; Mann, M.: Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links. SCIENCE 348 (6234), 1253671 (2015)
  11. 11.
    Journal Article
    Cox, J.; Hein, M. Y.; Luber, C. A.; Paron, I.; Nagaraj, N.; Mann, M.: Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ. MOLECULAR & CELLULAR PROTEOMICS 13 (9), pp. 2513 - 2526 (2014)
  12. 12.
    Journal Article
    Kulak, N. A.; Pichler, G.; Paron, I.; Nagaraj, N.; Mann, M.: Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells. NATURE METHODS 11 (3), pp. 319 - 324 (2014)
  13. 13.
    Journal Article
    Azimifar, S. B.; Nagaraj, N.; Cox, J.; Mann, M.: Cell-type-resolved quantitative proteomics of murine liver. Cell metabolism 20 (6), pp. 1076 - 1087 (2014)
  14. 14.
    Journal Article
    Christiano, R.; Nagaraj, N.; Froehlich, F.; Walther, T. C.: Global Proteome Turnover Analyses of the Yeasts S-cerevisiae and S-pombe. CELL REPORTS 9 (5), pp. 1959 - 1965 (2014)
  15. 15.
    Journal Article
    D'Souza, R. C. J.; Knittle, A. M.; Nagaraj, N.; van Dinther, M.; Choudhary, C.; ten Dijke, P.; Mann, M.; Sharma, K.: Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-beta. SCIENCE SIGNALING 7 (335), rs5 (2014)
  16. 16.
    Journal Article
    Geiger, T.; Velic, A.; Macek, B.; Lundberg, E.; Kampf, C.; Nagaraj, N.; Uhlen, M.; Cox, J.; Mann, M.: Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse. MOLECULAR & CELLULAR PROTEOMICS 12 (6), pp. 1709 - 1722 (2013)
  17. 17.
    Journal Article
    Neuhauser, N.; Nagaraj, N.; McHardy, P.; Zanivan, S.; Scheltema, R.; Cox, J.; Mann, M.: High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome. JOURNAL OF PROTEOME RESEARCH 12 (6), pp. 2858 - 2868 (2013)
  18. 18.
    Journal Article
    Mann, M.; Kulak, N. A.; Nagaraj, N.; Cox, J.: The Coming Age of Complete, Accurate, and Ubiquitous Proteomes. MOLECULAR CELL 49 (4), pp. 583 - 590 (2013)
  19. 19.
    Journal Article
    Nagaraj, N.; D'Souza, R. C. J.; Cox, J.; Olsen, J. V.; Mann, M.: Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation (vol 9, pg 6786, 2010). JOURNAL OF PROTEOME RESEARCH 11 (6), pp. 3506 - 3508 (2012)
  20. 20.
    Journal Article
    Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Pääbo, S.; Mann, M.: Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology 7, 548, pp. [1] - [8] (2011)
 
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