Search results

Journal Article (115)

  1. 1.
    Journal Article
    Frottin, F.; Schueder, F.; Tiwary, S.; Gupta, R.; Körner, R.; Schlichthaerle, T.; Cox, J.; Jungmann, R.; Hartl, F. U.; Hipp, M. S.: The nucleolus functions as a phase-separated protein quality control compartment. Science 365 (6451), pp. 342 - 347 (2019)
  2. 2.
    Journal Article
    Iacobucci, C.; Piotrowski, C.; Aebersold, R.; Amaral, B. C.; Andrews, P.; Bernfur, K.; Borchers, C.; Brodie, N. I.; Bruce, J. E.; Cao, Y. et al.; Chaignepain, S.; Chavez, J. D.; Claverol, S.; Cox, J.; Davis, T.; Degliesposti, G.; Dong, M.-Q.; Edinger, N.; Emanuelsson, C.; Gay, M.; Goetze, M.; Gomes-Neto, F.; Gozzo, F. C.; Gutierrez, C.; Haupt, C.; Heck, A. J. R.; Herzog, F.; Huang, L.; Hoopmann, M. R.; Kalisman, N.; Klykov, O.; Kukacka, Z.; Liu, F.; MacCoss, M. J.; Mechtler, K.; Mesika, R.; Moritz, R. L.; Nagaraj, N.; Nesati, V.; Neves-Ferreira, A. G. C.; Ninnis, R.; Novak, P.; O'Reilly, F. J.; Pelzing, M.; Petrotchenko, E.; Piersimoni, L.; Plasencia, M.; Pukala, T.; Rand, K. D.; Rappsilber, J.; Reichmann, D.; Sailer, C.; Sarnowski, C. P.; Scheltema, R. A.; Schmidt, C.; Schriemer, D. C.; Shi, Y.; Skehel, J. M.; Slavin, M.; Sobott, F.; Solis-Mezarino, V.; Stephanowitz, H.; Stengel, F.; Stieger, C. E.; Trabjerg, E.; Trnka, M.; Vilaseca, M.; Viner, R.; Xiang, Y.; Yilmaz, S.; Zelter, A.; Ziemianowicz, D.; Leitner, A.; Sinz, A.: First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. Analytical Chemistry 91 (11), pp. 6953 - 6961 (2019)
  3. 3.
    Journal Article
    Perez-Riverol, Y.; Csordas, A.; Bai, J.; Bernal-Llinares, M.; Hewapathirana, S.; Kundu, D. J.; Inuganti, A.; Griss, J.; Mayer, G.; Eisenacher, M. et al.; Perez, E.; Uszkoreit, J.; Pfeuffer, J.; Sachsenberg, T.; Yilmaz, S.; Tiwary, S.; Cox, J.; Audain, E.; Walzer, M.; Jarnuczak, A. F.; Ternent, T.; Brazma, A.; Vizcaino, J. A.: The PRIDE database and related tools and resources in 2019: improving support for quantification data. Nucleic Acids Research 47 (D1), pp. D442 - D450 (2019)
  4. 4.
    Journal Article
    Rudolph, J. D.; Cox, J.: A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis. Journal of Proteome Research 18 (5), pp. 2052 - 2064 (2019)
  5. 5.
    Journal Article
    Tiwary, S.; Levy, R.; Gutenbrunner, P.; Salinas Soto, F.; Palaniappan, K. K.; Deming, L.; Berndl, M.; Brant, A.; Cimermancic, P.; Cox, J.: High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis. Nature methods 16 (6), pp. 519 - 525 (2019)
  6. 6.
    Journal Article
    Wichmann, C.; Meier, F.; Virreira Winter, S.; Brunner, A.-D.; Cox, J.; Mann, M.: MaxQuant. Live Enables Global Targeting of More Than 25,000 Peptides. Molecular and Cellular Proteomics 18 (5), pp. 982 - 994 (2019)
  7. 7.
    Journal Article
    Meier, F.; Brunner, A.-D.; Koch, S.; Koch, H.; Lubeck, M.; Krause, M.; Goedecke, N.; Decker, J.; Kosinski, T.; Park, M. A. et al.; Bache, N.; Hoerning, O.; Cox, J.; Raether, O.; Mann, M.: Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped on mobility mass spectrometer. Molecular and Cellular Proteomics 17 (12) (2018)
  8. 8.
    Journal Article
    Sinitcyn, P.; Rudolph, J. D.; Cox, J.: Computational Methods for Understanding Mass Spectrometry-Based Shotgun Proteomics Data. Annual Review of Biomedical Data Science 1 (1), pp. 207 - 234 (2018)
  9. 9.
    Journal Article
    Cappellini, E.; Prohaska, A.; Racimo, F.; Welker, F.; Pedersen, M. W.; Allentoft, M. E.; Damgaard, P. d. B.; Gutenbrunner, P.; Dunne, J.; Hammann, S. et al.; Roffet-Salque, M.; Ilardo, M.; Moreno-Mayar, J. V.; Wang, Y.; Sikora, M.; Vinner, L.; Cox, J.; Evershed, R. P.; Willerslev, E.: Ancient biomolecules and evolutionary inference. Annual Review of Biochemistry 87, pp. 1029 - 1060 (2018)
  10. 10.
    Journal Article
    Overmyer, K. A.; Tyanova, S.; Hebert, A. S.; Westphall, M. S.; Cox, J.; Coon, J. J.: Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice. Nature Protocols 13 (2), pp. 293 - 306 (2018)
  11. 11.
    Journal Article
    Iglesias-Gato, D.; Thysell, E.; Tyanova, S.; Crnalic, S.; Santos, A.; Lima, T. S.; Geiger, T.; Cox, J.; Widmark, A.; Bergh, A. et al.; Mann, M.; Flores-Morales, A.; Wikstrom, P.: The Proteome of Prostate Cancer Bone Metastasis Reveals Heterogeneity with Prognostic Implications. Clinical Cancer Research 24 (21), pp. 5433 - 5444 (2018)
  12. 12.
    Journal Article
    Krahmer, N.; Najafi, B.; Schueder, F.; Quagliarini, F.; Steger, M.; Seitz, S.; Kasper, R.; Salinas, F.; Cox, J.; Uhlenhaut, N. H. et al.; Walther, T. C.; Jungmann, R.; Zeigerer, A.; Borner, G. H. H.; Mann, M.: Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. Developmental Cell 47 (2), pp. 205 - 221.e7 (2018)
  13. 13.
    Journal Article
    Meier, F.; Geyer, P. E.; Winter, S. V.; Cox, J.; Mann, M.: BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes. Nature methods 15 (6), pp. 440 - 448 (2018)
  14. 14.
    Journal Article
    Shurtleff, M. J.; Itzhak, D. N.; Hussmann, J. A.; Oakdale, N. T. S.; Costa, E. A.; Jonikas, M.; Weibezahn, J.; Popova, K. D.; Jan, C. H.; Sinitcyn, P. et al.; Vembar, S. S.; Hernandez, H.; Cox, J.; Burlingame, A. L.; Brodsky, J.; Frost, A.; Borner, G. H. H.; Weissman, J. S.: The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins. eLife 7 (2018)
  15. 15.
    Journal Article
    Sinitcyn, P.; Tiwary, S.; Rudolph, J.; Gutenbrunner, P.; Wichmann, C.; Yilmaz, S.; Hamzeiy, H.; Salinas, F.; Cox, J.: MaxQuant goes Linux. Nature methods 15 (6), p. 401 - 401 (2018)
  16. 16.
    Journal Article
    Virreira Winter, S.; Meier, F.; Wichmann, C.; Cox, J.; Mann, M.; Meissner, F.: EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification. Nature methods 15 (7), pp. 527 - 530 (2018)
  17. 17.
    Journal Article
    Hosp, F.; Gutiérrez-Ángel, S.; Schaefer, M. H.; Cox, J.; Meissner, F.; Hipp, M. S.; Hartl, F. U.; Klein, R.; Dudanova, I.; Mann, M.: Spatiotemporal Proteomic Profiling of Huntington’s Disease Inclusions Reveals Widespread Loss of Protein Function. Cell Reports 21 (8) (2017)
  18. 18.
    Journal Article
    Hartl, M.; Fuessl, M.; Boersema, P. J.; Jost, J.-O.; Kramer, K.; Bakirbas, A.; Sindlinger, J.; Ploechinger, M.; Leister, D.; Uhrig, G. et al.; Moorhead, G. B. G.; Cox, J.; Salvucci, M. E.; Schwarzer, D.; Mann, M.; Mann, M.; Finkemeier, I.: Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology 13 (10) (2017)
  19. 19.
    Journal Article
    Hamzeiy, H.; Cox, J.: What computational non-targeted mass spectrometry-based metabolomics can gain from shotgun proteomics. Current Opinion in Biotechnology 43, pp. 141 - 146 (2017)
  20. 20.
    Journal Article
    Hughes, M. E.; Abruzzi, K. C.; Allada, R.; Anafi, R.; Arpat, A. B.; Asher, G.; Baldi, P.; de Bekker, C.; Bell-Pedersen, D.; Blau, J. et al.; Brown, S.; Ceriani, M. F.; Chen, Z.; Chiu, J. C.; Cox, J.; Crowell, A. M.; DeBruyne, J. P.; Dijk, D.-J.; DiTacchio, L.; Doyle, F. J.; Duffield, G. E.; Dunlap, J. C.; Eckel-Mahan, K.; Esser, K. A.; FitzGerald, G. A.; Forger, D. B.; Francey, L. J.; Fu, Y.-H.; Gachon, F.; Gatfield, D.; de Goede, P.; Golden, S. S.; Green, C.; Harer, J.; Harmer, S.; Haspel, J.; Hastings, M. H.; Herzel, H.; Herzog, E. D.; Hoffmann, C.; Hong, C.; Hughey, J. J.; Hurley, J. M.; de la Iglesia, H. O.; Johnson, C.; Kay, S. A.; Koike, N.; Kornacker, K.; Kramer, A.; Lamia, K.; Leise, T.; Lewis, S. A.; Li, J.; Li, X.; Liu, A. C.; Loros, J. J.; Martino, T. A.; Menet, J. S.; Merrow, M.; Millar, A. J.; Mockler, T.; Naef, F.; Nagoshi, E.; Nitabach, M. N.; Olmedo, M.; Nusinow, D. A.; Ptacek, L. J.; Rand, D.; Reddy, A. B.; Robles, M. S.; Roenneberg, T.; Rosbash, M.; Ruben, M. D.; Rund, S. S. C.; Sancar, A.; Sassone-Corsi, P.; Sehgal, A.; Sherrill-Mix, S.; Skene, D. J.; Storch, K.-F.; Takahashi, J. S.; Ueda, H. R.; Wang, H.; Weitz, C.; Westermark, P. O.; Wijnen, H.; Xu, Y.; Wu, G.; Yoo, S.-H.; Young, M.; Zhang, E. E.; Zielinski, T.; Hogenesch, J. B.: Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms 32 (5), pp. 380 - 393 (2017)
 
loading content
Go to Editor View