Publikationen von J. Cox

Zeitschriftenartikel (138)

121.
Zeitschriftenartikel
Cox, J.; Mann, M.: MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nature Biotechnology 26 (12), S. 1367 - 1372 (2008)
122.
Zeitschriftenartikel
Zanivan, S.; Gnad, F.; Wickström, S. A.; Geiger, T.; Macek, B.; Cox, J.; Fässler, R.; Mann, M.: Solid Tumor Proteome and Phosphoproteome Analysis by High Resolution Mass Spectrometry. Journal of Proteome Research 7 (12), S. 5314 - 5326 (2008)
123.
Zeitschriftenartikel
Schimmel, J.; Larsen, K. M.; Matic, I.; van Hagen, M.; Cox, J.; Mann, M.; Andersen, J. S.; Vertegaal, A. C. O.: The Ubiquitin-Proteasome System Is a Key Component of the SUMO-2/3 Cycle. Molecular & Cellular Proteomics 7 (11), S. 2107 - 2122 (2008)
124.
Zeitschriftenartikel
de Godoy, L. M. F.; Olsen, J. V.; Cox, J.; Nielsen, M. L.; Hubner, N. C.; Fröhlich, F.; Walther, T. C.; Mann, M.: Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455 (7217), S. 1251 - 1254 (2008)
125.
Zeitschriftenartikel
Bonaldi, T.; Straub, T.; Cox, J.; Kumar, C.; Becker, P. B.; Mann, M.: Combined use of RNAi and quantitative proteomics to study gene function in Drosophila. Molecular Cell 31 (5), S. 762 - 772 (2008)
126.
Zeitschriftenartikel
Waanders, L. F.; Almeida, R.; Prosser, S.; Cox, J.; Eikel, D.; Allen, M. H.; Schultz, G. A.; Mann, M.: A novel chromatographic method allows on-line reanalysis of the proteome. Molecular & Cellular Proteomics 7 (8), S. 1452 - 1459 (2008)
127.
Zeitschriftenartikel
Nielsen, M. L.; Vermeulen, M.; Bonaldi, T.; Cox, J.; Moroder, L.; Mann, M.: Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry. Nature Methods 5 (6), S. 459 - 460 (2008)
128.
Zeitschriftenartikel
Olsen, J. V.; Butter, F.; Hubner, N.; Cox, J.; Hyman, A.; Mann, M.: SILAC based quantitative proteomics to determine specific protein-protein and protein-DNA interactions. FEBS Journal 275 (Suppl. Suppl. 1), S. 29 - 29 (2008)
129.
Zeitschriftenartikel
Graumann, J.; Hubner, N. C.; Kim, J.B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: SILAC-labeling and proteome quantitation of mouse embryonic stem cells to a depth of 5111 proteins. Special Issue: 8th International Symposium On Mass Spectrometry In The Life Sciences, S. 672 - 683 (2008)
130.
Zeitschriftenartikel
Graumann, J.; Hubner, N. C.; Kim, J. B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Molecular & Cellular Proteomics 7 (4), S. 672 - 683 (2008)
131.
Zeitschriftenartikel
Lu, A.; Waanders, L. F.; Almeida, R.; Li, G. Q.; Allen, M.; Cox, J.; Olsen, J. V.; Bonaldi, T.; Mann, M.: Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer. International Journal of Mass Spectrometry 268 (2-3), S. 158 - 167 (2007)
132.
Zeitschriftenartikel
Cox, J.; Mann, M.: Is proteomics the new genomics? Cell 130 (3), S. 395 - 398 (2007)
133.
Zeitschriftenartikel
de Godoy, L.; Cox, J.; Olsen, J.; Bonaldi, T.; Kumar, C.; Hubner, N.; Macek, B.; Mann, M.: Expression proteomics at last; the determination of Proteome wide protein abundance changes by SILAC and high resolution mass Spectrometry. Molecular & Cellular Proteomics 6 (8 (Supplement)), 1.1, S. 18 - 18 (2007)
134.
Zeitschriftenartikel
Shi, R.; Kumar, C.; Zougman, A.; Zhang, Y.; Podtelejnikov, A.; Cox, J.; Wisniewski, J. R.; Mann, M.: Analysis of the mouse liver proteome using advanced mass spectrometry. Journal of Proteome Research 6 (8), S. 2963 - 2972 (2007)
135.
Zeitschriftenartikel
Smialowski, P.; Martin-Galiano, A. J.; Cox, J.; Frishman, D.: Predicting experimental properties of proteins from sequence by machine learning techniques. Current Protein & Peptide Science 8 (2), S. 121 - 133 (2007)
136.
Zeitschriftenartikel
Gnad, F.; Ren, S. B.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M.: PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology 8 (11), R250 (2007)
137.
Zeitschriftenartikel
Pfleghaar, K.; Heubes, S.; Cox, J.; Stemmann, O.; Speicher, M. R.: Securin is not required for chromosomal stability in human cells. PLoS Biology 3 (12), e416, S. 2127 - 2134 (2005)
138.
Zeitschriftenartikel
Pfleghaar, K.; Heubes, S.; Cox, J.; Stemmann, O.; Speicher, M. R.: Securin Is Not Required for Chromosomal Stability in Human Cells. PLoS Biology 3 (12), e416 (2005)

Buchkapitel (4)

139.
Buchkapitel
Tyanova, S.; Cox, J.: Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research. In: Cancer Systems Biology, S. 133 - 148 (Hg. von Stechow, L.). Humana Press, New York, NY (2018)
140.
Buchkapitel
Tyanova, S.; Mann, M.; Cox, J.: MaxQuant for In-Depth Analysis of Large SILAC Datasets. In: Methods in Molecular Biology; Vol. 1188, S. 351 - 364. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
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