Journal Publications (*: Co-first, °: Co-corresponding)


  • H. Goetzke, M. Kilisch, M. Martínez-Carranza, S. Sograte-Idrissi, A. Rajavel, T. Schlichthaerle, N. Engels, R. Jungmann, P. Stenmark, F. Opazo, S. Frey
    A rationally designed and highly versatile epitope tag for nanobody-based purification, detection and manipulation of proteins
    bioRxiv 640771

  • T. Schlichthaerle*, M.T. Strauss*, F. Schueder*, A. Auer, B. Nijmeijer, M. Kueblbeck, V. Jimenez Sabinina, J. Ries, J. Ellenberg, R. Jungmann
    Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT 
    bioRxiv 579961

  • J. Cnossen, T. Hinsdale, R. Thorsen, F. Schueder, R. Jungmann, C.S. Smith, B. Rieger, S. Stallinga
    Localization microscopy at doubled precision with patterned illumination
    bioRxiv 554337

  • M. Fazel, M.J. Wester, H. Mazloom-Farsibaf, M.B.M. Meddens, A. Eklund, T. Schlichthaerle, F. Schueder, R. Jungmann, K.A. Lidke
    Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo
    bioRxiv 530261

  • R. Sasmal, N. Das Saha, F. Schueder, D. Joshi, V. Sheeba, R. Jungmann, S.S. Agasti
    Dynamic Supramolecular Interaction in Cucurbit[7]uril Host-Guest Complex Enables Autonomous Single Molecule Blinking and Super-Resolution Imaging in Cells and Tissues
    chemRxiv 7291274


  • F. Stehr*, J. Stein*, F. Schueder, P. Schwille°, R. Jungmann°
    Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification
    Nature Communications (2019). 10: 1268

  • O.K. Wade*, J.B. Woehrstein*, P.C. Nickels*, S. Strauss*, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann
    124-color super-resolution imaging by engineering DNA-PAINT blinking kinetics
    Nano Letters (2019). 19(4): 2641-2646

  • T. Schlichthaerle*, M. Ganji*, A. Auer, O.K. Wade, R. Jungmann
    Bacterial‐derived antibody binders as small adapters for DNA‐PAINT
    ChemBioChem (2019). 20(8): 1032-1038. See also: ChemBioTalents

  • G.C. Ortega*, S. Falk*, P.A. Johansson*, E. Peyre, L. Broic, S.K. Sahu, W. Hirst, T. Schlichthaerle, C. Romero, K. Draganova, S. Vinopal, K. Chinnappa, A. Gavranovic, T. Karakaya, T. Steininger, J. Merl-Pham, R. Feederle, W. Shao, S. Shi, S.M. Hauck, R. Jungmann, F. Bradke, V. Borrell, A. Geerlof, S. Reber, V.K. Tiwari, W.B. Huttner, M. Wilsch-Bräuninger, L. Nguyen, M. Götz
    The centrosome protein Akna regulates neurogenesis via microtubule
    Nature (2019). 567: 113-117

  • S. Kempter, A. Khmelinskaia, M.T. Strauss, P. Schwille, R. Jungmann, T. Liedl, W. Bae
    Single Particle Tracking and Super-Resolution Imaging of Membrane-Assisted Stop-and-Go Diffusion and Lattice Assembly of DNA Origami
    ACS Nano (2019). 13(2): 996–1002


  • P. Blumhardt, J. Stein, J. Mücksch, F. Stehr, J. Bauer, R. Jungmann, P. Schwille
    Photo-Induced Depletion of Binding Sites in DNA-PAINT Microscopy
    Molecules (2018). 23(12): 3165

  • N. Krahmer, B. Nafaji, F. Schueder, F. Quagliarini, M. Steger, S. Seitz, R. Kasper, F. Salinas, J. Cox, N.H. Uhlenhaut, T.C. Walther, R. Jungmann, A. Zeigerer, G.H.H. Borner, M. Mann
    Organellar proteomics and phospho-proteomics reveal subcellular reorganization in diet-induced hepatic steatosis
    Developmental Cell (2018). 47(2): 205–221

  • N. Basnet, H. Nedozralova, A.H. Crevenna, S. Bodakuntla, T. Schlichthaerle, M. Taschner, G. Cardone, C. Janke, R. Jungmann, M.M. Magiera, C. Biertümpfel, N. Mizuno
    Direct induction of microtubule branching by microtubule nucleation factor SSNA1
    Nature Cell Biology (2018). 20: 1172–1180

  • H. Heydarian, F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, B. Rieger
    Template-free 2D particle fusion in localization microscopy
    Nature Methods (2018). 15: 781–784
    See also News & Views by Mark Bates  Nature Methods  (2018). 15: 771–772.

  • A. Auer, T. Schlichthaerle, J.B. Woehrstein, F. Schueder, M.T. Strauss, H. Grabmayr, R. Jungmann
    Nanometer-scale multiplexed super-resolution imaging with an economic 3D-DNA-PAINT microscope
    ChemPhysChem (2018). 19(22): 3024–3034 
    See also

  • S. Strauss, P.C. Nickels, M.T. Strauss, V.J. Sabinina, J. Ellenberg, J.D. Carter, S. Gupta, N. Janjic, R. Jungmann
    Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging
    Nature Methods (2018). 15: 685–688
    See also News & Views by Regan P. Moore and Wesley R. Legant  Nature Methods  (2018). 15: 659–660.

  • T. Schlichthaerle, A.S. Eklund, F. Schueder, M.T. Strauss, C. Tiede, A. Curd, J. Ries, M. Peckham, D.C. Tomlinson, R. Jungmann
    Site-specific labeling of Affimers for DNA-PAINT microscopy
    Angewandte Chemie Int. Ed. (2018). 57: 11060-11063 

  • N.S. Deußner-Helfmann, A. Auer, M.T. Strauss, S. Malkusch, M.S. Dietz, H. Barth, R. Jungmann°, M. Heilemann°
    Correlative Single-Molecule FRET and DNA-PAINT Imaging
    Nano Letters (2018). 18(7): 4626-4630 

  • M.T. Strauss*, F. Schueder*, D. Haas*, P.C. Nickels, R. Jungmann
    Quantifying absolute addressability in DNA origami with molecular resolution
    Nature Communications (2018). 9: 1600

  • J. Mücksch*, P. Blumhardt*, M.T. Strauss, E.P. Petrov, R. Jungmann, P. Schwille
    Quantifying reversible surface binding via surface-integrated FCS
    Nano Letters (2018). 18(5): 3185–3192

  • S. Baenfer, D. Schneider, J. Dewes, M.T. Strauss, S. Freibert, T. Heimerl, U.G. Maier, H. Elsaesser, R. Jungmann, R. Jacob
    A molecular mechanism to recruit galectin-3 into multivesicular bodies for polarized exosomal secretion 
    PNAS (2018). 115(19): E4396-E4405

  • A. Kuzyk°, R. Jungmann°, G.P. Acuna°, N. Liu°
    DNA origami route for nanophotonics
    ACS Photonics (2018). 5: 1151-1163 


  • F. Schueder, J. Lara-Guitérrez, B.J. Beliveau, S.K. Saka, H.M. Sasaki, J.B. Woehrstein, M.T. Strauss, H. Grabmayr, P. Yin°, R. Jungmann°
    Multiplexed 3D super-resolution imaging of whole cells using Spinning Disk Confocal Microscopy and DNA-PAINT
    Nature Communications (2017). 8: 2090
    Featured as Research Highlight in Nature Methods (2018). 15: 96-97.

  • E. Graugnard, W.L. Hughes, R. Jungmann, M.A. Kostiainen, V. Linko
    Nanometrology and super-resolution imaging with DNA
    MRS Bulletin (2017). 42(12): 951-959

  • A. Auer, M.T. Strauss, T. Schlichthaerle, R. Jungmann
    Fast, background-free DNA-PAINT imaging using FRET-based probes
    Nano Letters (2017). 17(10): 6428-6434

  • L.L. Ong, N. Hanikel, O.K. Yaghi, C. Grun, M.T. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J.Y. Kishi, C.A. Myhrvold, A. Zhu, R. Jungmann, G. Bellot°, Y. Ke°, P. Yin° 
    Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components
    Nature (2017). 552: 72-77

  • J.L. Werbin, M.S. Avendano, V. Becker, R. Jungmann, P. Yin°, G. Danuser°, P. K. Sorger°
    Multiplexed Exchange-PAINT imaging reveals ligand-dependent EGFR and Met interactions in the plasma membrane
    Scientific Reports (2017). 7: 12150

  • Y. Wang, J.B. Woehrstein, N. Donoghue, M. Dai, M.S. Avendano, R.C.J. Schackmann, J. Zoeller, S.S.H. Wang, P.W. Tillberg, D. Park, S.W. Lapan, E.S. Boyden, J.S. Brugge, P.S. Kaeser, G.M. Church, S.S. Agasti°, R. Jungmann°, P. Yin°
    Rapid sequential in situ multiplexing with DNA-Exchange-Imaging in Neuronal Cells and Tissues
    Nano Letters (2017). 17(10): 6131-6139

  • J.B. Woehrstein*, M.T. Strauss*, L.L. Ong, B. Wei, D.Y. Zhang, R. Jungmann°, P. Yin°
    Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA
    Science Advances (2017). 3: e1602128

  • J. Schnitzbauer*, M.T. Strauss*, T. Schlichthaerle, F. Schueder, R. Jungmann
    Super-Resolution Microscopy with DNA-PAINT
    Nature Protocols (2017). 12: 1198-1228

  • F. Schueder, M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann
    Universal Super-Resolution Multiplexing by DNA Exchange
    Angewandte Chemie Int. Ed. (2017). 56: 4052-4055

  • S. S. Agasti*, Y. Wang*, F. Schueder, A. Sukumar, R. Jungmann°, P. Yin°
    DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging
    Chemical Science (2017). 8: 3080–3091


  • M. Dai, R. Jungmann, P. Yin
    Optical imaging of individual biomolecules in densely packed clusters
    Nature Nanotechnology (2016). 11(9): 798–807

  • R. Jungmann
    Overcoming obstacles in localization microscopy
    Nature Methods (2016). 13: 301-302

  • R. Jungmann*, M.S. Avendaño*, M. Dai, J.B. Woehrstein, S. S. Agasti, Z. Feiger, A. Rodal, P. Yin
    Quantitative Super-Resolution Imaging with qPAINT
    Nature Methods (2016). 13: 439-442

  • T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, R. Jungmann
    DNA nanotechnology and fluorescence applications
    Current Opinion in Biotechnology (2016). 39: 41-47


  • T. Raschle, C. Lin, R. Jungmann, W.M. Shih, G. Wagner
    Controlled co-reconstitution of multiple membrane proteins in lipid bilayer nanodiscs using DNA as a scaffold
    ACS Chemical Biology (2015). 10(11): 2448-54

  • J.B. Knudsen. L. Liu, A.L.B. Kodal, M. Madsen, Q. Li, J. Song, J.B. Woehrstein, S.F.J. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W.M. Shih. R. Jungmann, M. Dong°, K.V. Gothelf°
    Routing of individual polymers in designed patterns
    Nature Nanotechnology (2015). 11: 892-898

  • M.B. Scheible, L.L. Ong, J.B. Woehstein, R. Jungmann, P. Yin, and F.C. Simmel
    A compact DNA cube with side length 10 nm
    Small (2015). 11(39): 5200-5

  • B. Beliveau, A. Boettiger, M. Avendaño, R. Jungmann, R. McCole, E. Joyce, C. Kim-Kiselak, F. Bantignies, C. Fonseka, J. Erceg, M. Hannan, H. Hoang, D. Colognori, J. Lee, W. Shih, P. Yin, X. Zhuang, and C. Wu
    Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
    Nature Communications (2015). 6: 1-13





  • E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, and F. C. Simmel
Timing molecular motion and production with a synthetic transcriptional clock

    PNAS (2011). 108: E784-E793

  • R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, and F. C. Simmel

    DNA origami-based nanoribbons: assembly, length distribution, and twist
    Nanotechnology (2011). 22: 275301

  • R. Jungmann, M. E. Szabo, G. Schitter, R. Tang, D. Vashishth, P. K. Hansma, and P. J. Thurner

    Local Strain and Damage Mapping in Single Trabeculae during Three-Point Bending Tests

    Journal of the Mechanical Behavior of Biomedical Materials (2011). 4(4): 523-534


  • R. Jungmann*, C. Steinhauer*, M. Scheible, A. Kuzyk, P. Tinnefeld°, and F. C. Simmel°
Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami

    Nano Letters (2010). 10(11): 4756-4761

  • D. Hönig, J. DeRouchey, R. Jungmann, C. Koch, C. Plank, and J. O. Rädler

    Biophysical Characterization of Copolymer-Protected Gene Vectors

    Biomacromolecules (2010). 11(7): 1802-1809

  • V. Tejedor, O. Bénichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber-Unkel, L.B. Oddershede, and R. Metzler

    Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method

    Biophysical Journal (2010). 98(7): 1364-1372


  • C. Steinhauer*, R. Jungmann*, T. Sobey, F. C. Simmel°, and P. Tinnefeld°

    DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy

    Angewandte Chemie Int. Ed(2009). 48(47): 8870-8873

  • P. J. Thurner, B. Erickson, P. Turner, R. Jungmann, J. Lelujian, A. Proctor, J. C. Weaver, G. Schitter, D. E. Morse, and P. K. Hansma
The effect of NaF in vitro on the mechanical and material properties of trabecular and cortical bone

    Advanced Materials (2009). 21(4): 451-457


  • R. Jungmann, T. Liedl, T. L. Sobey, W. Shih, and F. C. Simmel
Isothermal assembly of DNA origami structures using denaturing agents
    Journal of the American Chemical Society (2008). 130: 10062-10063

  • R. Jungmann, S. Renner, and F. C. Simmel
From DNA nanotechnology to synthetic biology
    HFSP Journal (2008). 2: 99-109

  • P. K. Hansma, P. Turner, B. Drake, E. Yurtsev, A. Proctor, P. Mathews, J. Lelujian, C. Randall, J. Adams, R. Jungmann, F. Garza-de-Leon, G. Fantner, H. Mkrtchyan, M. Pontin, A. Weaver, M. B. Brown, N. Sahar, R. Rossello, and D. Kohn

    The bone diagnostic instrument II: Indentation distance increase
    Review of Scientific Instruments (2008). 79(6): 064303-8


  • M. E. Lauer, R. Jungmann, J. H. Kindt, S. Magonov, J. H. Fuhrhop, E. Oroudjev, and H. G. Hansma

    Formation and Healing of Micrometer-Sized Channel Networks on Highly Mobile Au(111) Surfaces
    Langmuir (2007). 23(10): 5459-5465

  • P. J. Thurner, B. Erickson, R. Jungmann, Z. Schriock, J. C. Weaver, G. E. Fantner, G. Schitter, D. E. Morse, and P. K. Hansma
High-speed photography of compressed human trabecular bone correlates whitening to microscopic damage

    Engineering Fracture Mechanics (2007). 74(12): 1928-1941

Book Chapters

  • M. Scheible, R. Jungmann, and F. C. Simmel
Assembly and microscopic characterization of DNA origami structures
Advances in Experimental Medicine and Biology (2012). 733: 87–96

  • C. Steinhauer, C. Forthmann, R. Jungmann, J. Vogelsang, F. C. Simmel, and P. Tinnefeld

    Nanoscopy using localization and temporal separation of fluorescence from single molecules

    NATO Science for Peace and Security Series B: Physics and Biophysics (2011). Part 1, 87-106

  • P. J. Thurner, E. Oroudjev, R. Jungmann, C. Kreutz, J. H. Kindt, G. Schitter, T. O. Okouneva, M. E. Lauer, G. E. Fantner, H. G. Hansma, and P. K. Hansma

    Imaging of Bone Ultrastructure using Atomic Force Microscopy
    Modern Research and Educational Topics in Microscopy 3rd Edition (2007). Vol. 1, 37-48 
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