2006
MCP Papers in Press. Published on December 12, 2006 as Manuscript M600380-MCP200
On the proper use of mass accuracy in proteomics.
Roman Zubarev1 and Matthias Mann2
Nature Reviews Molecular Cell Biology 7, 952-958 (December 2006) | doi:10.1038/nrm2067
Functional and quantitative proteomics using SILAC
Matthias Mann1
doi:10.1016/j.cell.2006.09.026
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
Jesper V. Olsen1, 2, 3, Blagoy Blagoev1, 3, Florian Gnad2, 3, Boris Macek1, 2, Chanchal Kumar2, Peter Mortensen1 and Matthias Mann1, 2,
Methods. 2006 Nov;40(3):243-50.
Quantitative proteomics to study mitogen-activated protein kinases.
Blagoev B, Mann M.
Biophys J. 2006 Oct 1;91(7):2601-8. Epub 2006 Jul 21
Perlwapin, an abalone nacre protein with three four-disulfide core (whey acidic protein) domains, inhibits the growth of calcium carbonate crystals
Treccani L, Mann K, Heinemann F, Fritz M
Nat Methods. 2006 Oct 29; [Epub ahead of print]
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).
Selbach M, Mann M.
Submitted on July 12, 2006 Accepted on October 15, 2006
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations and phosphorylation as well as differences between cell culture and tissue
Jacek R. Wiśniewski, Alexandre Zougman, Sonja Krueger, and Matthias Mann
Mol Cell Proteomics. 2006 Sep 25; [Epub ahead of print]
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics.
Alfred C. O. Vertegaal, Jens S. Andersen, Stephen C. Ogg, Ronald T. Hay, Matthias Mann, and Angus I. Lamond
EMBO Rep. 2006 Sep;7(9):874-9
Organellar proteomics: turning inventories into insights.
Andersen JS, Mann M.
Genome Biology 2006, 7:R80 doi:10.1186/gb-2006-7-9-R80
The human urinary proteome contains more than 1500 proteins including a large proportion of membranes proteins.
Jun Adachi1 ,2, Chanchal Kumar1 , Yanling Zhang1 ,3, Jesper V Olsen1 ,2 and Matthias Mann1 ,2
Genome Biology 2006, 7:R72 doi:10.1186/gb-2006-7-8-r72
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.
Gustavo A de Souza1 ,2, Lyris MF de Godoy1 ,2 and Matthias Mann1 ,2
Genome Biology 2006, 7:R50 doi:10.1186/gb-2006-7-6-r50.
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.
Lyris MF de Godoy1 ,2 , Jesper V Olsen1 ,2 , Gustavo A de Souza1 ,2 , Guoqing Li1 , Peter Mortensen2 and Matthias Mann1 ,2
Genome Biology, Vol 7, 10.1186/gb-2006-7-5-r40, 18 May 2006.
Large-scale and high-confidence proteomic analysis of human seminal plasma.
Bartosz Pilch1, 2 and Matthias Mann1, 2
Molecular Cell, Vol 22, 285-295, 21 April 2006
A Wiring of the Human Nucleolus.
Anders M. Hinsby,1,3 Lars Kiemer,1,3 E. Olof Karlberg,1 Kasper Lage,1 Anders Fausbøll,1 Agnieszka S. Juncker,1 Jens S. Andersen,2 Matthias Mann,2 and Søren Brunak1,
Cell, Vol 125, 187-199, 7 April 2006
A Mammalian Organelle Map by Protein Correlation Profiling.
Leonard J. Foster,1,2 Carmen L. de Hoog,1,2 Yanling Zhang,3,4 Yong Zhang,3,4 Xiaohui Xie,5 Vamsi K. Mootha,5,6 and Matthias Mann1,3,
J Proteome Res. 2006 Apr;5(4):988-94.
Modular Stop and Go Extraction Tips with Stacked Disks for Parallel and Multidimensional Peptide Fractionation in Proteomics.
Yasushi Ishihama,*,†,| Juri Rappsilber,‡,| and Matthias Mann*,§
Mol Cell Proteomics. 2006 Apr;5(4):608-19. Epub 2006 Jan 14.
Quantitative proteomic comparison of rat mitochondria from muscle, heart and liver.
Forner F, Foster LJ, Campanaro S, Valle G, Mann M.
Blood, 2006, 108: 791-801
In-depth analysis of the membrane and cytosolic proteome of red blood cells.
Erica M Pasini, Morten Kirkegaard, Peter Mortensen, Hans U Lutz, Alan Thomas, and Matthias Mann*
Nature 440, 303-307 (16 March 2006) | doi:10.1038/nature04616; Received 12 December 2005; Accepted 1 February 2006
Robust Salmonella metabolism limits possibilities for new antimicrobials.
Daniel Becker1,5,*, Matthias Selbach2,5,*, Claudia Rollenhagen1,5,*, Matthias Ballmaier3, Thomas F. Meyer1, Matthias Mann2 and Dirk Bumann1,4
J Cell Biol. 2006 Feb 27;172(5):679-92. Epub 2006 Feb 21.
Repo-Man recruits PP1{gamma} to chromatin and is essential for cell viability.
Trinkle-Mulcahy L, Andersen J, Lam YW, Moorhead G, Mann M, Lamond AI.
MCP published February 13, 2006, 10.1074/mcp.T500042-MCP200
Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.
Boris Macek, Leonie Waanders, Jesper V. Olsen, and Matthias Mann.
Nat Cell Biol. 2006 Feb;8(2):163-9. Epub 2006 Jan 22.
Regulation of ubiquitin-binding proteins by monoubiquitination.
Hoeller D, Crosetto N, Blagoev B, Raiborg C, Tikkanen R, Wagner S, Kowanetz K, Breitling R, Mann M, Stenmark H, Dikic I.
Nature. 2006 Jan 12;439(7073):204-7. Epub 2005 Nov 23.
Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6.
Hacker H, Redecke V, Blagoev B, Kratchmarova I, Hsu LC, Wang GG, Kamps MP, Raz E, Wagner H, Hacker G, Mann M, Karin M.
J Proteome Res. 2006 Jan;5(1):64-75.
Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
Foster LJ, Rudich A, Talior I, Patel N, Huang X, Furtado LM, Bilan PJ, Mann M, Klip A.
Genes Dev. 2006 Jan 1;20(1):113-24.
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Kruse T, Blagoev B, Lobner-Olesen A, Wachi M, Sasaki K, Iwai N, Mann M, Gerdes K.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D218-20.
NOPdb: Nucleolar Proteome Database.
Leung AK, Trinkle-Mulcahy L, Lam YW, Andersen JS, Mann M, Lamond AI.
Comp Biochem Physiol B Biochem Mol Biol. 2006 Feb;143(2):160-70. Epub 2006 Jan 3
Amino acid sequences and phosphorylation sites of emu and rhea eggshell C-type lectin-like proteins
Mann K, Siedler F.
Mol Cell Proteomics. 2005 Dec;4(12):2010-21. Epub 2005 Oct 24
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
Olsen JV, de Godoy LM, Li G, Macek B, Mortensen P, Pesch R, Makarov A, Lange O, Horning S, Mann M.
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