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- SILAC
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- Quantitation of Complete Proteomes
- In vivo proteomics
- Mass Spectrometry Technology
- Phosphoproteomics and Cell Signaling
  - PHOSIDA
- Proteomics Mapping
  - sample processing
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- Phosphorylation
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- Acetylation
- Phosida
Interaction proteomics
Publications
- Phosphoproteins of the chicken eggshell calcified layer
- Quantitative proteomic profiling of membrane proteins
- SILAC
- Time-Lapse Proteomics
- SILAC
- Molecular approaches for the identification of novel egg components
- SILAC
- The low molecular weight proteome of Halobacterium salinarum.
- In-gel digestion
- In-depth analysis of the adipocyte proteome
- Analysis of Nucleolar Protein Dynamics
- Quantitative proteomic assessment of very early cellular signaling events.
- Urine release of systemically administered bone morphogenetic protein hybrid molecule
- A mass spectrometry-friendly database for cSNP identification
- Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation.
- Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
- Analysis of the Mouse Liver Proteome Using Advanced Mass Spectrometry
- Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
- The chicken egg white proteome
- Perlinhibin, a cysteine-, histidine-, and arginine-rich miniprotein from abalone
- Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
- Selective Anchoring of TFIID to Nucleosomes
- Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation
- Top-down quantitation and characterization of SILAC- labeled proteins
- Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS
- Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2
- Phosida
- N-Formylation of lysine
- Integrated Analysis of the Cerebrospinal Fluid Peptidome and Proteome
- The chicken egg yolk plasma and granule proteomes
- In vivo identification of human SUMO polymerization sites
- Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level
- Dissection of the insulin signaling pathway via quantitative phosphoproteomics.
- Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation
- The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2
- The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2
- Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
- Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications.
- Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics
- Protocol to enrich and analyze plasma membrane proteins from frozen tissues
- Proteomic analysis of the chicken egg vitelline membrane
- Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
- The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle.
- Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis
- Phosphorylation of the human full-length protein kinase Ciota
- SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
- Can Proteomics Retire the Western Blot?
- High confidence determination of specific protein-protein interactions using quantitative mass spectrometry
- How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
- The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes.
- Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
- Ubc9 sumoylation regulates SUMO target discrimination.
- Phosphorylation of SUMO-1 Occurs in Vivo and Is Conserved through Evolution.
- Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
- Special Feature: Precision proteomics: The case for high resolution and high mass accuracy.
- A high confidence, manually validated human blood plasma protein reference set.
- Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
- The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
- Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane
- Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors
- Solid Tumor Proteome and Phosphoproteome Analysis by High Resolution Mass Spectrometry
- Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential
- Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis
- Evidence for insertional RNA editing in humans
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- In-depth, high-accuracy proteomics of sea urchin tooth organic matrix
- MAPU 2.0: high-accuracy proteomes mapped to genomes
- A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements
- Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type specific functions
- The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2
- Bioinformatics analysis of mass spectrometry-based proteomics data sets.
- Comparative Proteomic Profiling of Membrane Proteins in Rat Cerebellum, Spinal Cord, and Sciatic Nerve.
- Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life.
- Universal sample preparation method for proteome analysis
- Large-scale proteomics analysis of the human kinome
- A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
- Host cell interactome of tyrosine-phosphorylated bacterial proteins
- Isolation, Characterisation and Molecular Imaging of a High-Molecular-Weight Insect Biliprotein, a Member of the Hexameric Arylphorin Protein Family
- Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics
- System-wide changes to SUMO modifications in response to heat shock
- Computational Principles of Determining and Improving Mass Precision and Accuracy for Proteome Measurements in an Orbitrap
- Phosphorylation of histone h3 thr-45 is linked to apoptosis
- Unbiased RNA-protein interaction screen by quantitative proteomics
- C. elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins
- Red Blood Cell (RBC) membrane proteomics- Part I: Proteomics and RBC physiology
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
- Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
- Mapping of lysine monomethylation of linker histones in human breast and its cancer.
- High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.
- Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions.
- A dual pressure linear ion trap - Orbitrap instrument with very high sequencing speed.
- Quantitative proteomic analysis of single pancreatic islets
- Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
- Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome
- Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
- MSQuant, an open source platform for mass spectrometry-based quantitative proteomics
- A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth
- Red blood cell (RBC) membrane proteomics--Part I: Proteomics and RBC physiology.
- Red blood cell (RBC) membrane proteomics--Part II: Comparative proteomics and RBC patho-physiology.
- A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth
- Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells
- Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix
- Regulation of translesion synthesis DNA polymerase eta by monoubiquitination
- The HLA-B 2705 peptidome.
- Super-SILAC mix for quantitative proteomics of human tumor tissue.
- Predicting Posttranslational Lysine Acetylation Using Support Vector Machines
- Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints
- Decoding signalling networks by mass spectrometry-based proteomics
- The phosphoproteome of toll-like receptor-activated macrophages
- Perseoartcheomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix
- Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology
- Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis
- Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry
- Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming.
- Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes and mitochondria
- Mass spectrometry-based proteomics in cell biology
- Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif
- Red blood cell proteomics
- Proteomic changes resulting from gene copy number variations in cancer cells
- Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions
- Proteomics on an Orbitrap benchtop mass spectrometer using all ion fragmentation
- Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers
- Integrin-linked kinase controls microtubule dynamics required for plasma membrane targeting of caveolae
- Accurate quantification of more than 4,000 mouse tissue proteins reveals minimal proteome changes during aging
- Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method
- Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation
- PHOSIDA 2011: the posttranslational modification database
- Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome
- Resources for proteomics in mouse embryonic stem cells
- Andromeda - a peptide search engine integrated into the MaxQuant environment
- Proteomic snapshot of the EGF-induced ubiquitin network
- Quantitative proteomics for epigenetics
- In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos
- Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community
- More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS
- Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation
- Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology
- Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene
- Deep and highly sensitive proteome coverage by LC-MS/MS without pre-fractionation
- Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
- Comparative proteomic analysis identifies a role for SUMO in protein quality control
- High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers
- High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers
- A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
- In Vivo Quantitative Proteomics: The SILAC Mouse
- A protein epitope signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines
- Systems-wide perturbation analysis with near complete coverage of the yeast proteome by single-shot UHPLC runs on a bench-top Orbitrap
- Deep proteome and transcriptome mapping of a human cancer cell line
- Systems-wide Proteomic Analysis in Mammalian Cells Reveals Conserved, Functional Protein Turnover
- Triple SILAC to Determine Stimulus Specific Interactions in the Wnt Pathway
- Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes
- Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response
- A framework for intelligent data acquisition and real-time database searching for shotgun proteomics
- The eggshell: structure, composition and mineralization
- Reduced CD36-dependent tissue sequestration of Plasmodium-infected erythrocytes is detrimental to malaria parasite growth in vivo
- 2006
  - Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
  - Nucleolar Proteome Database
  - Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
  - Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
  - Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6.
  - Amino acid sequences and phosphorylation sites of emu and rhea eggshell C-type lectin-like proteins
  - Regulation of ubiquitin-binding proteins by monoubiquitination
  - Top-down protein sequencing
  - Repo-Man recruits PP1
  - Robust Salmonella metabolism
  - In-depth analysis of the membrane
  - Quantitative proteomic comparison of rat mitochondria from muscle, heart and liver.
  - Modular Stop and Go Extraction
  - A Mammalian Organelle Map
  - A Wiring of the Human Nucleolus
  - Large-scale and high-confidence proteomic analysis
  - Status of complete proteome analysis
  - Identification of 491 proteins
  - The human urinary proteome
  - Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer
  - Organellar proteomics
  - Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics
  - Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK)
  - Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations and phosphorylation as well as differences between cell culture and tissue
  - Perlwapin, an abalone nacre protein with three four-disulfide core (whey acidic protein) domains, inhibits the growth of calcium carbonate crystals
  - Site-Specific Phosphorylation
  - Quantitative proteomics to study mitogen-activated protein kinases.
  - Functional and quantitative proteomics using SILAC
  - On the proper use of mass accuracy in proteomics
Profile
Proteomic Forum 2007
Jobs
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