Publications
J Proteome Res. 2012 Apr 3. [Epub ahead of print]
PhosphoSiteAnalyzer: A bioinformatic platform for deciphering phospho proteomes using kinase predictions retrieved from NetworKIN.
Bennetzen MV, Cox J, Mann M, Andersen JS.
Mol Cell Proteomics. 2012 Mar 21. [Epub ahead of print]
Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles.
Deeb SJ, D'Souza R, Cox J, Schmidt-Supprian M, Mann M.
Cancer Res. 2012 Mar 13. [Epub ahead of print]
Proteomic portrait of human breast cancer progression identifies novel prognostic markers.
Geiger T, Madden SF, Gallagher WM, Cox J, Mann M.
Mol Cell Proteomics. 2012 Mar;11(3):O112.017731. Epub 2012 Feb 6.
Advancing Cell Biology Through Proteomics in Space and Time (PROSPECTS).
Lamond AI, Uhlen M, Horning S, Makarov A, Robinson CV, Serrano L, Hartl FU, Baumeister W, Werenskiold AK, Andersen JS, Vorm O, Linial M, Aebersold R, Mann M.
Mol Cell Proteomics. 2012 Mar;11(3):M111.014050. Epub 2012 Jan 25.
Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins.
Geiger T, Wehner A, Schaab C, Cox J, Mann M.
Anal Chem. 2012 Mar 1. [Epub ahead of print]
Consecutive Proteolytic Digestion in an Enzyme Reactor Increases Depth of Proteomic and Phosphoproteomic Analysis.
Wiśniewski JR, Mann M.
Mol Cell Proteomics. 2012 Mar;11(3):M111.014068. Epub 2012 Feb 2.
Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database.
Schaab C, Geiger T, Stoehr G, Cox J, Mann M.
J Cell Sci. 2012 Jan 15;125(Pt 2):435-48.
Induction of membrane circular dorsal ruffles requires co-signalling of integrin-ILK-complex and EGF receptor.
Azimifar SB, Böttcher RT, Zanivan S, Grashoff C, Krüger M, Legate KR, Mann M, Fässler R.
J Exp Med. 2012 Jan 16;209(1):93-107. Epub 2011 Dec 19.
Reduced CD36-dependent tissue sequestration of Plasmodium-infected erythrocytes is detrimental to malaria parasite growth in vivo.
Fonager J, Pasini EM, Braks JA, Klop O, Ramesar J, Remarque EJ, Vroegrijk IO, van Duinen SG, Thomas AW, Khan SM, Mann M, Kocken CH, Janse CJ, Franke-Fayard BM.
Front Biosci. 2012 Jan 1;17:1266-80.
The eggshell: structure, composition and mineralization.
Hincke MT, Nys Y, Gautron J, Mann K, Rodriguez-Navarro AB, McKee MD.
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Mol Cell Proteomics. 2011 Dec 13. [Epub ahead of print]
A framework for intelligent data acquisition and real-time database searching for shotgun proteomics.
Graumann J, Scheltema RA, Zhang Y, Cox J, Mann M.
Mol Cell Proteomics. 2011 Dec 13. [Epub ahead of print]
Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response.
Sharma K, Vabulas RM, Macek B, Pinkert S, Cox J, Mann M, Hartl FU.
Mol Cell Proteomics. 2011 Dec 9. [Epub ahead of print]
Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.
Michalski A, Damoc E, Lange O, Denisov E, Nolting D, Mueller M, Viner R, Schwartz J, Remes P, Belford M, Dunyach JJ, Cox J, Horning S, Mann M, Makarov A.
Mol Syst Biol. 2011 Nov 8;7:548. doi: 10.1038/msb.2011.81.
Deep proteome and transcriptome mapping of a human cancer cell line.
Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, Pääbo S, Mann M.
J Proteome Res. 2011 Nov 3. [Epub ahead of print]
Systems-wide Proteomic Analysis in Mammalian Cells Reveals Conserved, Functional Protein Turnover.
Cambridge SB, Gnad F, Nguyen C, Bermejo JL, Krüger M, Mann M.
J Proteome Res. 2011 Nov 18. [Epub ahead of print]
Triple SILAC to Determine Stimulus Specific Interactions in the Wnt Pathway.
Hilger M, Mann M.
Mol Cell Proteomics. 2011 Oct 20. [Epub ahead of print]
Systems-wide perturbation analysis with near complete coverage of the yeast proteome by single-shot UHPLC runs on a bench-top Orbitrap.
Nagaraj N, Kulak NA, Cox J, Neuhaus N, Mayr K, Hoerning O, Vorm O, Mann M.
Mol Cell Proteomics. 2011 Sep 30. [Epub ahead of print]
A protein epitope signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines.
Zeiler M, Straube WL, Lundberg E, Uhlen M, Mann M.
Methods Mol Biol. 2012;757:435-50.
In Vivo Quantitative Proteomics: The SILAC Mouse.
Zanivan S, Krueger M, Mann M.
Mol Cell Proteomics. 2011 Sep 1. [Epub ahead of print]
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
Nat Methods. 2011 Jul 10;8(8):655-8. doi: 10.1038/nmeth.1647.
Large-scale phosphosite quantification in tissues by a spike-in SILAC method.
Monetti M, Nagaraj N, Sharma K, Mann M.
J Proteome Res. 2011 Jul 1;10(7):3040-3049. Epub 2011 May 18.
High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers.
Wiśniewski JR, Ostasiewicz P, Mann M.
Sci Signal. 2011 Jun 21;4(178):rs4.
Comparative proteomic analysis identifies a role for SUMO in protein quality control.
Tatham MH, Matic I, Mann M, Hay RT.
Mol Cell Proteomics. 2011 Jun 3.
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.
Michalski A, Damoc E, Hauschild JP, Lange O, Wieghaus A, Makarov A, Nagaraj N, Cox J, Mann M, Horning S.
Mol Cell Proteomics. 2011 May 17.
Deep and highly sensitive proteome coverage by LC-MS/MS without pre-fractionation.
Thakur SS, Geiger T, Chatterjee B, Bandilla P, Froehlich F, Cox J, Mann M.
Nucleic Acids Res. 2011 May 17.
Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene.
Zougman A, Mann M, Wisniewski JR.
Annu Rev Biochem. May 2011.
Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology.
Cox J, Mann M.
Sci Signal. 2011 Mar 15;4(164):rs3.
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B.
J Proteome Res. 2011 Feb 28. [Epub ahead of print]
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC-MS/MS.
Michalski A, Cox J, Mann M.
Sci Signal. 2011 Feb 15;4(160):pe7.
Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community.
Olsen JV, Mann M.
Nat Methods. 2011 Feb;8(2):103-4.
Resources for proteomics in mouse embryonic stem cells.
Schnütgen F, Ehrmann F, Poser I, Hubner NC, Hansen J, Floss T, Devries I, Wurst W, Hyman A, Mann M, von Melchner H.
Nat Protoc. 2011 Feb;6(2):147-57.
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.
Geiger T, Wisniewski JR, Cox J, Zanivan S, Kruger M, Ishihama Y, Mann M.
Proteome Science 2011, 9:7doi:10.1186/1477-5956-9-7
In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos.
Mann K, Mann M.
J Proteome Res. 2011 Jan 21. [Epub ahead of print]
Andromeda - a peptide search engine integrated into the MaxQuant environment.
Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M.
Mol Syst Biol. 2011 Jan 18;7:462.
Proteomic snapshot of the EGF-induced ubiquitin network.
Argenzio E, Bange T, Oldrini B, Bianchi F, Peesari R, Mari S, Di Fiore PP, Mann M, Polo S.
Chembiochem. 2011 Jan 24;12(2):224-34. doi: 10.1002/cbic.201000429.
Quantitative proteomics for epigenetics.
Eberl HC, Mann M, Vermeulen M.
J Proteome Res. 2011 Jan 5. [Epub ahead of print]
Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome.
Nagaraj N, Mann M.
Nucleic Acids Res. 2011 January; 39(Database issue): D253–D260.
PHOSIDA 2011: the posttranslational modification database.
Gnad F, Gunawardena J, Mann M.
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Anal Biochem. 2010 Dec 6. [Epub ahead of print]
Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method.
Wiśniewski JR, Zielinska DF, Mann M.
J Proteome Res. 2010 Dec 3;9(12):6786-94. Epub 2010 Oct 26
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.
Nagaraj N, D'Souza RC, Cox J, Olsen JV, Mann M.
Mol Cell Proteomics. 2010 Nov 3. [Epub ahead of print]
Accurate quantification of more than 4,000 mouse tissue proteins reveals minimal proteome changes during aging.
Walther DM, Mann M.
Dev Cell. 2010 Oct 19;19(4):574-88.
Integrin-linked kinase controls microtubule dynamics required for plasma membrane targeting of caveolae.
Wickström SA, Lange A, Hess MW, Polleux J, Spatz JP, Krüger M, Pfaller K, Lambacher A, Bloch W, Mann M, Huber LA, Fässler R.
Cell. 2010 Sep 17;142(6):967-80.
Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers.
Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M.
Mol Cell Proteomics. 2010 Sep 10. [Epub ahead of print]
Proteomics on an Orbitrap benchtop mass spectrometer using all ion fragmentation.
Geiger T, Cox J, Mann M.
J Proteome Res. 2010 Sep 3;9(9):4839-50.
Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions.
Sun N, Pan C, Nickell S, Mann M, Baumeister W, Nagy I.
PLoS Genet. 2010 Sep 2;6(9). pii: e1001090.
Proteomic changes resulting from gene copy number variations in cancer cells.
Geiger T, Cox J, Mann M.
Transfus Clin Biol. 2010 Sep;17(3):151-64. Epub 2010 Jul 23.
Red blood cell proteomics.
Pasini EM, Mann M, Thomas AW.
Mol Cell. 2010 Aug 27;39(4):641-52.
Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif.
Matic I, Schimmel J, Hendriks IA, van Santen MA, van de Rijke F, van Dam H, Gnad F, Mann M, Vertegaal AC.
J Cell Biol. 2010 Aug 23;190(4):491-500.
Mass spectrometry-based proteomics in cell biology.
Walther TC, Mann M.
Mol Cell Proteomics. 2010 Aug 5. [Epub ahead of print]
Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes and mitochondria.
Gnad F, Forner F, Zielinska DF, Birney E, Gunawardena J, Mann M.
J Proteome Res. 2010 Jul 2;9(7):3638-3646.
Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis.
Soufi B, Kumar C, Gnad F, Mann M, Mijakovic I, Macek B.
J Proteome Res. 2010 Jul 2;9(7):3688-3700.
Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry.
Ostasiewicz P, Zielinska DF, Mann M, Wiśniewski JR.
J Proteome Res. 2010 Jun 4;9(6):3280-9.
Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.
Wiśniewski JR, Nagaraj N, Zougman A, Gnad F, Mann M.
Proteome Science 2010, 8:33
Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix.
Karlheinz Mann, Fred H Wilt and Albert J Poustka
Cell. 2010 Jun 11;141(6):943-55.
Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming.
Singhal N, Graumann J, Wu G, Araúzo-Bravo MJ, Han DW, Greber B, Gentile L, Mann M, Schöler HR.
Molecular Systems Biology 6 Article number: 371 doi:10.1038/msb.2010.29
The phosphoproteome of toll-like receptor-activated macrophages.
Gabriele Weintz, Jesper V Olsen, Katja Frühauf, Magdalena Niedzielska, Ido Amit, Jonathan Jantsch, Jörg Mages, Cornelie Frech, Lars Dölken, Matthias Mann & Roland Lang
Nature Reviews Molecular Cell Biology 11, 427-439 (June 2010)
Decoding signalling networks by mass spectrometry-based proteomics.
Chunaram Choudhary1 & Matthias Mann
Cell, Volume 141, Issue 5, 897-907, 28 May 2010
Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints
D. Zielinska, F. Gnad, J. Wisniewski, M. Mann
Bioinformatics Advance Access published online on May 26, 2010
Predicting Posttranslational Lysine Acetylation Using Support Vector Machines
Florian Gnad, Shubin Ren, Chunaram Choudhary, Jürgen Cox, Matthias Mann
Nat Methods. 2010 Apr 4. [Epub ahead of print]
Super-SILAC mix for quantitative proteomics of human tumor tissue.
Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M.
Proteome Sci. 2010 Feb 8;8(1):6.
Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix: identification of a major acidic sea urchin tooth phosphoprotein, phosphodontin.
Mann K, Poustka AJ, Mann M.
Immunity. 2010 Feb 26;32(2):279-289. Epub 2010 Feb 18.
Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells.
Luber CA, Cox J, Lauterbach H, Fancke B, Selbach M, Tschopp J, Akira S, Wiegand M, Hochrein H, O'Keeffe M, Mann M.
Mol Cell. 2010 Feb 12;37(3):396-407.
Regulation of translesion synthesis DNA polymerase eta by monoubiquitination.
Bienko M, Green CM, Sabbioneda S, Crosetto N, Matic I, Hibbert RG, Begovic T, Niimi A, Mann M, Lehmann AR, Dikic I.
EMBO Rep. 2010 Feb 5. [Epub ahead of print]
A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.
Butter F, Kappei D, Buchholz F, Vermeulen M, Mann M.
Arthritis Rheum. 2010 Feb;62(2):420-9.
The HLA-B*2705 peptidome.
Ben Dror L, Barnea E, Beer I, Mann M, Admon A.
J Proteome Res. 2010 Jan;9(1):393-403.
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.
Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M.
J Proteomics. 2010 Jan 3;73(3):421-35. Epub 2009 Jul 19.
Red blood cell (RBC) membrane proteomics--Part II: Comparative proteomics and RBC patho-physiology.
Pasini EM, Lutz HU, Mann M, Thomas AW.
J Proteomics. 2010 Jan 3;73(3):403-20. Epub 2009 Jun 21.
Red blood cell (RBC) membrane proteomics--Part I: Proteomics and RBC physiology.
Pasini EM, Lutz HU, Mann M, Thomas AW.
Sci Signal. 2010 Jan 12;3(104):ra3.
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M.
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J Proteome Res. 2009 Dec;8(12):5674-8.
Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.
Wiśniewski JR, Zougman A, Mann M.
Mol Cell Proteomics. 2009 Dec;8(12):2796-808. Epub 2009 Aug 3.
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics.
Pan C, Olsen JV, Daub H, Mann M.
Proc Natl Acad Sci U S A. 2009 Oct 21. [Epub ahead of print]
Quantitative proteomic analysis of single pancreatic islets.
Waanders LF, Chwalek K, Monetti M, Kumar C, Lammert E, Mann M.
Mol Cell Proteomics. 2009 Oct 14. [Epub ahead of print]
A dual pressure linear ion trap - Orbitrap instrument with very high sequencing speed.
Olsen JV, Schwartz JC, Griep-Raming J, Nielsen ML, Damoc E, Denisov E, Lange O, Remes P, Taylor D, Splendore M, Wouters ER, Senko M, Makarov A, Mann M, Horning S.
Cell Metab. 2009 Oct;10(4):324-35.
Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions.
Forner F, Kumar C, Luber CA, Fromme T, Klingenspor M, Mann M.
Proteomics. 2009 Sep 30;9(20):4642-4652. [Epub ahead of print]
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.
Gnad F, de Godoy LM, Cox J, Neuhauser N, Ren S, Olsen JV, Mann M.
1: J Proteome Res. 2009 Sep;8(9):4207-15.
Mapping of lysine monomethylation of linker histones in human breast and its cancer.
Lu A, Zougman A, Pudełko M, Bebenek M, Ziółkowski P, Mann M, Wiśniewski JR.
Science. 2009 Jul 16. [Epub ahead of print]
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions.
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther T, Olsen JV, Mann M.
J Proteomics. 2009 Jun 18. [Epub ahead of print]
Red Blood Cell (RBC) membrane proteomics- Part I: Proteomics and RBC physiology.
Pasini EM, Lutz HU, Mann M, Thomas AW.
J Proteome Res. 2009 Jun 16. [Epub ahead of print]
C. elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.
Zielinska D, Gnad F, Jedrusik-Bode M, Wiśniewski JR, Mann M.
Proc Natl Acad Sci U S A. 2009 Jun 16. [Epub ahead of print]
Unbiased RNA-protein interaction screen by quantitative proteomics.
Butter F, Scheibe M, Mörl M, Mann M.
J Biol Chem. 2009 Jun 12;284(24):16575-83. Epub 2009 Apr 10.
Phosphorylation of histone h3 thr-45 is linked to apoptosis.
Hurd PJ, Bannister AJ, Halls K, Dawson MA, Vermeulen M, Olsen JV, Ismail H, Somers J, Mann M, Owen-Hughes T, Gout I, Kouzarides T.
Sci Signal. 2009 May 26;2(72):ra24.
System-wide changes to SUMO modifications in response to heat shock.
Golebiowski F, Matic I, Tatham MH, Cole C, Yin Y, Nakamura A, Cox J, Barton GJ, Mann M, Hay RT.
J Am Soc Mass Spectrom. 2009 May 20. [Epub ahead of print]
Computational Principles of Determining and Improving Mass Precision and Accuracy for Proteome Measurements in an Orbitrap.
Cox J, Mann M.
FEBS Letters, Volume 583, Issue 11, Pages 1703-1712 (5 June 2009)
Bioinformatics analysis of mass spectrometry-based proteomics data sets.
Kumar C, Mann M.
Mol Cell Proteomics. 2009 May 9. [Epub ahead of print]
Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics.
Hilger M, Bonaldi T, Gnad F, Mann M.
J Proteome Res. 2009 May;8(5):2418-25.
Comparative Proteomic Profiling of Membrane Proteins in Rat Cerebellum, Spinal Cord, and Sciatic Nerve.
Lu A, Wiśniewski JR, Mann M.
Nat Methods. 2009 May;6(5):359-62. Epub 2009 Apr 19.
Universal sample preparation method for proteome analysis.
Jacek R Wiśniewski, Alexandre Zougman, Nagarjuna Nagaraj & Matthias Mann
Cell Host Microbe. 2009 Apr 23;5(4):397-403.
Host cell interactome of tyrosine-phosphorylated bacterial proteins.
Selbach M, Paul FE, Brandt S, Guye P, Daumke O, Backert S, Dehio C, Mann M.
J Mol Biol. 2009 Apr 8. [Epub ahead of print]
Isolation, Characterisation and Molecular Imaging of a High-Molecular-Weight Insect Biliprotein, a Member of the Hexameric Arylphorin Protein Family.
Kayser H, Mann K, Machaidze G, Nimtz M, Ringler P, Müller SA, Aebi U.
Nat Protoc. 2009;4(5):698-705.
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.
Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, Mann M.
Mol Cell Proteomics. 2009 Apr 15. [Epub ahead of print]
Large-scale proteomics analysis of the human kinome.
Oppermann FS, Gnad F, Olsen JV, Hornberger R, Greff Z, Kéri G, Mann M, Daub H
PLoS ONE. 2009;4(3):e4777. Epub 2009 Mar 10.
Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life.
Aivaliotis M, Macek B, Gnad F, Reichelt P, Mann M, Oesterhelt D.
Mol Cell Proteomics. 2009 Mar;8(3):519-34. Epub 2008 Nov 11.
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2.
Hanke S, Mann M.
Mol Cell Proteomics. 2009 Mar;8(3):443-50. Epub 2008 Oct 23.
Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type specific functions.
Pan C, Kumar C, Bohl S, Klingmueller U, Mann M.
Annu Rev Pharmacol Toxicol. 2009;49:199-221.
Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications.
Macek B, Mann M, Olsen JV.
Genome Res. 2009 Jan 5. [Epub ahead of print]
A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements.
Mittler G, Butter F, Mann M.
Nucleic Acids Res. 2009 Jan;37(Database issue):D902-6. Epub 2008 Oct 23.
MAPU 2.0: high-accuracy proteomes mapped to genomes.
Gnad F, Oroshi M, Birney E, Mann M.
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Science news stories - www.sciencemag.org
BREAKTHROUGH OF THE YEAR:The Runners-Up
L. M. F. de Godoy et al., "Comprehensive Mass-Spectrometry-Based Proteome Quantification of Haploid versus Diploid Yeast," Nature 455, 1251-1254 (2008)
PROTEOMICS: Proteomics Ponders Prime Time
Proteome Sci. 2008 Dec 9;6:33..
In-depth, high-accuracy proteomics of sea urchin tooth organic matrix.
Mann K, Poustka AJ, Mann M.
Nat Biotechnol. 2008 Nov 30.
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.
Cox J, Mann M.
Curr Biol. 2008 Nov 25;18(22):1760-5.
Evidence for insertional RNA editing in humans.
Zougman A, Ziółkowski P, Mann M, Wiśniewski JR.
Proteomics. 2008 Nov 10.
Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis.
Hubner NC, Ren S, Mann M.
PLoS Pathog. 2008 Oct;4(10):e1000195.
Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity.
Lasonder E, Janse CJ, van Gemert GJ, Mair GR, Vermunt AM, Douradinha BG, van Noort V, Huynen MA, Luty AJ, Kroeze H, Khan SM, Sauerwein RW, Waters AP, Mann M, Stunnenberg HG.
Proteins. 2008 Nov 15;73(3):710-8.
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.
Jacek R. Wiśniewski, Alexandre Zougman, Sonja Krüger, Piotr Ziółkowski, Marek Pudełko, Marek Bębenek, Matthias Mann
J Proteome Res. 2008 Oct 31.
Solid Tumor Proteome and Phosphoproteome Analysis by High Resolution Mass Spectrometry.
Zanivan S, Gnad F, Wickström SA, Geiger T, Macek B, Cox J, Fässler R, Mann M.
Nature. 2008 Oct 30;455(7217):1251-4. Epub 2008 Sep 28.
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.
de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.
Proteomics. 2008 Oct 7;8(21):4534-4546. [Epub ahead of print]
Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors.
Pan C, Gnad F, Olsen JV, Mann M.
J Proteome Res. 2008 Oct 8. [Epub ahead of print]
Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs.
Nagaraj N, Lu A, Mann M, Wiśniewski JR.
Proc Natl Acad Sci U S A. 2008 Sep 25. [Epub ahead of print]
Special Feature: Precision proteomics: The case for high resolution and high mass accuracy.
Mann M, Kelleher NL.
BMC Med Genomics. 2008 Sep 15;1(1):41. [Epub ahead of print]
A high confidence, manually validated human blood plasma protein reference set.
Schenk S, Schoenhals GJ, Souza GD, Mann M.
J Proteome Res. 2008 Sep 5;7(9):4050-4057. Epub 2008 Aug 16.
Phosphorylation of SUMO-1 Occurs in Vivo and Is Conserved through Evolution.
Matic I, Macek B, Hilger M, Walther TC, Mann M.
Mol Cell. 2008 Sep 5;31(5):762-72.
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.
Bonaldi T, Straub T, Cox J, Kumar C, Becker PB, Mann M.
Mol Cell Proteomics. 2008 Sep;7(9):1763-77. Epub 2008 May 31.
Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Mertins P, Eberl HC, Renkawitz J, Olsen JV, Tremblay ML, Mann M, Ullrich A, Daub H.
Proteomics. 2008 Sep;8(17):3486-93.
The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
Soufi B, Gnad F, Jensen PR, Petranovic D, Mann M, Mijakovic I, Macek B.
Proteome Sci. 2008 Aug 11;6:22.
The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes.
Mann K, Poustka AJ, Mann M.
Mol Cell. 2008 Aug 8;31(3):438-48.
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Körner R, Greff Z, Kéri G, Stemmann O, Mann M.
Mol Cell. 2008 Aug 8;31(3):371-82.
Ubc9 sumoylation regulates SUMO target discrimination.
Knipscheer P, Flotho A, Klug H, Olsen JV, van Dijk WJ, Fish A, Johnson ES, Mann M, Sixma TK, Pichler A.
J Am Soc Mass Spectrom. 2008 Aug 7.
How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
Cox J, Hubner NC, Mann M.
Curr Opin Biotechnol. 2008 Aug;19(4):331-7.
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
Vermeulen M, Hubner NC, Mann M.
J Proteome Res. 2008 Aug;7(8):3065.
Can proteomics retire the Western blot?
Matthias Mann
Bioinformatics. 2008 Jul 1;24(13):i416-23.
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
Bandeira N, Olsen JV, Mann JV, Mann M, Pevzner PA.
Cell. 2008 Jul 25;134(2):353-64.
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function.
Krüger M, Moser M, Ussar S, Thievessen I, Luber CA, Forner F, Schmidt S, Zanivan S, Fässler R, Mann M.
J Proteome Res. 2008 Jul;7(7):2928-35. Epub 2008 May 20.
Phosphorylation of the human full-length protein kinase Ciota.
Macek B, Benda C, Jestel A, Maskos K, Mann M, Messerschmidt A.
Mol Cell Proteomics. 2008 Jun 18. [Epub ahead of print]
The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle.
Schimmel J, Larsen KM, Matic I, van Hagen M, Cox J, Mann M, Andersen JS, Vertegaal AC.
World's Poultry Science Journal, Volume 64, Issue 02, June 2008, pp 209-218
Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis.
K. Mann, J.V. Olsen, B. Macek, F. Gnad, M. Mann
Nat Methods. 2008 Jun;5(6):459-60.
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry.
Nielsen ML, Vermeulen M, Bonaldi T, Cox J, Moroder L, Mann M.
PROTEOMICS Volume 8 Issue 11, Pages 2322 - 2332; Published Online: 2 May 2008
Proteomic analysis of the chicken egg vitelline membrane.
Karlheinz Mann
Methods Mol Biol. 2008;432:175-83
Protocol to enrich and analyze plasma membrane proteins from frozen tissues.
Jacek R. Wiśniewski
MCP Papers in Press. Published on April 29, 2008 as Manuscript M800141-MCP200
A novel chromatographic method allows online reanalysis of the proteome.
Waanders LF, Almeida R, Prosser S, Cox J, Eikel D, Allen MH, Schultz GA, Mann M
Mol Cell Proteomics. 2008 Apr;7(4):672-83.
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins.
Graumann J, Hubner NC, Kim JB, Ko K, Moser M, Kumar C, Cox J, Schöler H, Mann M.
RNA. 2008 Mar 6 [Epub ahead of print]
The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2.
Maitra S, Chou CF, Luber CA, Lee KY, Mann M, Chen CY
Mol Cell Proteomics. 2008 Feb;7(2):299-307. Epub 2007 Oct 15.
Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation.
Boris Macek, Florian Gnad, Boumediene Soufi, Chanchal Kumar, Jesper V. Olsen, Ivan Mijakovic, and Matthias Mann
ASAP J. Proteome Res., ASAP Article, 10.1021/pr7007175
Absolute SILAC for Accurate Quantitation of Proteins in Complex Mixtures Down to the Attomole Level.
Stefan Hanke, Hüseyin Besir, Dieter Oesterhelt and Matthias Mann
Proc Natl Acad Sci U S A. 2008 Feb 11 [Epub ahead of print]
Dissection of the insulin signaling pathway via quantitative phosphoproteomics.
Krüger M, Kratchmarova I, Blagoev B, Tseng YH, Kahn CR, Mann M
Mol Cell Proteomics. 2008 Jan;7(1):132-44. Epub 2007 Oct 15.
In vivo identification of human SUMO polymerization sites by high accuracy mass spectrometry and an in-vitro to in-vivo strategy.
Ivan Matic, Martijn van Hagen, Joost Schimmel, Boris Macek, Stephen C. Ogg, Michael H. Tatham, Ronald T. Hay, Angus I. Lamond, Matthias Mann, and Alfred C. O. Vertegaal
Proteomics 2008, 8, 178–191; DOI 10.1002/pmic.200700790
The chicken egg yolk plasma and granule proteomes.
Karlheinz Mann and Matthias Mann
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ASAP J. Proteome Res., ASAP Article, 1535-3907; Web Release Date: December 4, 2007
Integrated Analysis of the Cerebrospinal Fluid Peptidome and Proteome.
Alexandre Zougman, Bartosz Pilch, Alexandre Podtelejnikov, Michael Kiehntopf, Claudia Schnabel, Chanchal Kumar, and Matthias Mann
Nucleic Acids Research Advance Access published online on December 1, 2007; doi:10.1093/nar/gkm1057
Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function.
Jacek R. Wiśniewski*, Alexandre Zougman and Matthias Mann
Genome Biology 2007, 8:R250doi:10.1186/gb-2007-8-11-r250 Published: 26 November 2007
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.
Florian Gnad, Shubin Ren, Juergen Cox, Jesper V. Olsen, Boris Macek, Mario Oroshi and Matthias Mann
MCP Papers in Press. Published on October 15, 2007 as Manuscript M700241-MCP200
Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2.
Martin Lee Miller, Stefan Hanke, Anders Mørkeberg Hinsby, Carsten Friis, Søren Brunak, Matthias Mann, and Nikolaj Blom
Journal of the American Society for Mass Spectrometry Article in Press, Accepted Manuscript
Top-down quantitation and characterization of SILAC- labeled proteins.
Waanders LF, Hanke S, Mann M.
International Journal of Mass Spectrometry Article in Press, Corrected Proof
Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer.
Lu A, Waanders LF, Almeida R, Li G, Allen M, Cox J, Olsen JV, Bonaldi T, Mann M.
Nature. 2007 Sep 26; [Epub ahead of print]
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation.
Kirmizis A, Santos-Rosa H, Penkett CJ, Singer MA, Vermeulen M, Mann M, Bähler J, Green RD, Kouzarides T.
Cell. 2007 Sep 18; [Epub ahead of print]
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4.
Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT.
Nat Methods. 2007 Sep;4(9):709-12. Epub 2007 Aug 26.
Higher-energy C-trap dissociation for peptide modification analysis.
Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M.
PROTEOMICS. 27 Aug 2007; Volume 7, Issue 19 , Pages 3558 - 3568
The chicken egg white proteome
Mann K
Nucleic Acids Res. 2007 Aug 24; [Epub ahead of print]
Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification.
Notenboom V, Hibbert RG, van Rossum-Fikkert SE, Olsen JV, Mann M, Sixma TK.
Biophys J. 2007 Aug 15;93(4):1246-54. Epub 2007 May 11.
Perlinhibin, a cysteine-, histidine-, and arginine-rich miniprotein from abalone (Haliotis laevigata) nacre, inhibits in vitro calcium carbonate crystallization.
Mann K, Siedler F, Treccani L, Heinemann F, Fritz M.
Cell, Vol 130, 395-398, 10 August 2007
Essay
Is Proteomics the New Genomics?
Jürgen Cox and Matthias Mann
J Proteome Res. 2007 Jul 3; [Epub ahead of print]
Analysis of the Mouse Liver Proteome Using Advanced Mass Spectrometry.
Shi R, Kumar C, Zougman A, Zhang Y, Podtelejnikov A, Cox J, Wiśniewski JR, Mann M.
Methods Mol Biol. 2007;359:37-52
Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
Ong SE, Mann M.
EMBO J. 2007 Jun 6;26(11):2797-807. Epub 2007 May 10
Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation.
Knipscheer P, van Dijk WJ, Olsen JV, Mann M, Sixma TK.
Nat Methods. 2007 Jun;4(6):465-6
A mass spectrometry-friendly database for cSNP identification.
Schandorff S, Olsen JV, Bunkenborg J, Blagoev B, Zhang Y, Andersen JS, Mann M.
J Nephrol. 2007 May-Jun;20(3):311-9
Urine release of systemically administered bone morphogenetic protein hybrid molecule.
Grgurevic L, Macek B, Erjavec I, Mann M, Vukicevic S.
Nat Biotechnol. 2007 Apr 22; [Epub ahead of print]
Quantitative proteomic assessment of very early cellular signaling events.
Dengjel J, Akimov V, Olsen JV, Bunkenborg J, Mann M, Blagoev B, Andersen JS.
Curr Biol. 2007 Apr 17; [Epub ahead of print]
Analysis of Nucleolar Protein Dynamics Reveals the Nuclear Degradation of Ribosomal Proteins.
Lam YW, Lamond AI, Mann M, Andersen JS
Mol Cell Proteomics. 2007 Apr 5; [Epub ahead of print]
In-depth analysis of the adipocyte proteome by mass spectrometry and bioinformatics.
Adachi J, Kumar C, Zhang Y, Mann M
Nature Protocols 1, - 2856 - 2860 (2007) doi:10.1038/nprot.2006.468
In-gel digestion for mass spectrometric characterization of proteins and proteomes.
Andrej Shevchenko1, Henrik Tomas1, Jan Havlis breve1, Jesper V Olsen2, Matthias Mann2
J Proteome Res. 2007 Apr;6(4):1510-8. Epub 2007 Feb 28.Click here to read
The low molecular weight proteome of Halobacterium salinarum.
Klein C, Aivaliotis M, Olsen JV, Falb M, Besir H, Scheffer B, Bisle B, Tebbe A, Konstantinidis K, Siedler F, Pfeiffer F, Mann M, Oesterhelt D.
Mol Cell Proteomics. 2007 Apr;6(4):697-707. Epub 2007 Jan 10.
The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis.
Macek B, Mijakovic I, Olsen JV, Gnad F, Kumar C, Jensen PR, Mann M
World's Poultry Science Journal (2007), 63: 82-90 Cambridge University Press doi:10.1017/S0043933907001298
Molecular approaches for the identification of novel egg components
Gautron J, Nau F, Mann K, Guerin-Dubiard C, Rehault S, Hincke M T, Nys Y.
Mol Cell Proteomics. 2007 Mar;6(3):377-81. Epub 2006 Dec 12.
On the proper use of mass accuracy in proteomics.
Zubarev R, Mann M.
Time-Lapse Proteomics
Isotope labeling and mass spectrometry unite to track proteome dynamics.
By Chandra Shekhar
Nucleic Acids Res. 2007 Jan;35(Database issue):D771-9. Epub 2006 Nov 7.
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Zhang Y, Zhang Y, Adachi J, Olsen JV, Shi R, de Souza G, Pasini E, Foster LJ, Macek B, Zougman A, Kumar C, Wiśniewski JR, Jun W, Mann M.
Published online 11 January 2007; doi:10.1038/nprot.2006.427
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
Shao-En Ong1 & Matthias Mann2
Brain Res. 2007 Jan 4; [Epub ahead of print]
Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: Mapping of neurotransmitter receptors and ion channels
Jesper V. Olsena,b, Peter Aa. Nielsenc,1, Jens R. Andersenc, Matthias Manna,b,*, Jacek R. Wiśniewskib,c,*
Proteomics. 2007 Jan;7(1):106-15.
Phosphoproteins of the chicken eggshell calcified layer
Karlheinz Mann, Dr. *, Jesper V. Olsen, Boris Maek, Florian Gnad, Matthias Mann
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MCP Papers in Press. Published on December 12, 2006 as Manuscript M600380-MCP200
On the proper use of mass accuracy in proteomics.
Roman Zubarev1 and Matthias Mann2
Nature Reviews Molecular Cell Biology 7, 952-958 (December 2006) | doi:10.1038/nrm2067
Functional and quantitative proteomics using SILAC
Matthias Mann1
doi:10.1016/j.cell.2006.09.026
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
Jesper V. Olsen1, 2, 3, Blagoy Blagoev1, 3, Florian Gnad2, 3, Boris Macek1, 2, Chanchal Kumar2, Peter Mortensen1 and Matthias Mann1, 2,
Methods. 2006 Nov;40(3):243-50.
Quantitative proteomics to study mitogen-activated protein kinases.
Blagoev B, Mann M.
Biophys J. 2006 Oct 1;91(7):2601-8. Epub 2006 Jul 21
Perlwapin, an abalone nacre protein with three four-disulfide core (whey acidic protein) domains, inhibits the growth of calcium carbonate crystals
Treccani L, Mann K, Heinemann F, Fritz M
Nat Methods. 2006 Oct 29; [Epub ahead of print]
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).
Selbach M, Mann M.
Submitted on July 12, 2006 Accepted on October 15, 2006
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations and phosphorylation as well as differences between cell culture and tissue
Jacek R. Wiśniewski, Alexandre Zougman, Sonja Krueger, and Matthias Mann
Mol Cell Proteomics. 2006 Sep 25; [Epub ahead of print]
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics.
Alfred C. O. Vertegaal, Jens S. Andersen, Stephen C. Ogg, Ronald T. Hay, Matthias Mann, and Angus I. Lamond
EMBO Rep. 2006 Sep;7(9):874-9
Organellar proteomics: turning inventories into insights.
Andersen JS, Mann M.
Genome Biology 2006, 7:R80 doi:10.1186/gb-2006-7-9-R80
The human urinary proteome contains more than 1500 proteins including a large proportion of membranes proteins.
Jun Adachi1 ,2, Chanchal Kumar1 , Yanling Zhang1 ,3, Jesper V Olsen1 ,2 and Matthias Mann1 ,2
Genome Biology 2006, 7:R72 doi:10.1186/gb-2006-7-8-r72
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.
Gustavo A de Souza1 ,2, Lyris MF de Godoy1 ,2 and Matthias Mann1 ,2
Genome Biology 2006, 7:R50 doi:10.1186/gb-2006-7-6-r50.
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.
Lyris MF de Godoy1 ,2 , Jesper V Olsen1 ,2 , Gustavo A de Souza1 ,2 , Guoqing Li1 , Peter Mortensen2 and Matthias Mann1 ,2
Genome Biology, Vol 7, 10.1186/gb-2006-7-5-r40, 18 May 2006.
Large-scale and high-confidence proteomic analysis of human seminal plasma.
Bartosz Pilch1, 2 and Matthias Mann1, 2
Molecular Cell, Vol 22, 285-295, 21 April 2006
A Wiring of the Human Nucleolus.
Anders M. Hinsby,1,3 Lars Kiemer,1,3 E. Olof Karlberg,1 Kasper Lage,1 Anders Fausbøll,1 Agnieszka S. Juncker,1 Jens S. Andersen,2 Matthias Mann,2 and Søren Brunak1,
Cell, Vol 125, 187-199, 7 April 2006
A Mammalian Organelle Map by Protein Correlation Profiling.
Leonard J. Foster,1,2 Carmen L. de Hoog,1,2 Yanling Zhang,3,4 Yong Zhang,3,4 Xiaohui Xie,5 Vamsi K. Mootha,5,6 and Matthias Mann1,3,
J Proteome Res. 2006 Apr;5(4):988-94.
Modular Stop and Go Extraction Tips with Stacked Disks for Parallel and Multidimensional Peptide Fractionation in Proteomics.
Yasushi Ishihama,*,†,| Juri Rappsilber,‡,| and Matthias Mann*,§
Mol Cell Proteomics. 2006 Apr;5(4):608-19. Epub 2006 Jan 14.
Quantitative proteomic comparison of rat mitochondria from muscle, heart and liver.
Forner F, Foster LJ, Campanaro S, Valle G, Mann M.
Blood, 2006, 108: 791-801
In-depth analysis of the membrane and cytosolic proteome of red blood cells.
Erica M Pasini, Morten Kirkegaard, Peter Mortensen, Hans U Lutz, Alan Thomas, and Matthias Mann*
Nature 440, 303-307 (16 March 2006) | doi:10.1038/nature04616; Received 12 December 2005; Accepted 1 February 2006
Robust Salmonella metabolism limits possibilities for new antimicrobials.
Daniel Becker1,5,*, Matthias Selbach2,5,*, Claudia Rollenhagen1,5,*, Matthias Ballmaier3, Thomas F. Meyer1, Matthias Mann2 and Dirk Bumann1,4
J Cell Biol. 2006 Feb 27;172(5):679-92. Epub 2006 Feb 21.
Repo-Man recruits PP1{gamma} to chromatin and is essential for cell viability.
Trinkle-Mulcahy L, Andersen J, Lam YW, Moorhead G, Mann M, Lamond AI.
MCP published February 13, 2006, 10.1074/mcp.T500042-MCP200
Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.
Boris Macek, Leonie Waanders, Jesper V. Olsen, and Matthias Mann.
Nat Cell Biol. 2006 Feb;8(2):163-9. Epub 2006 Jan 22.
Regulation of ubiquitin-binding proteins by monoubiquitination.
Hoeller D, Crosetto N, Blagoev B, Raiborg C, Tikkanen R, Wagner S, Kowanetz K, Breitling R, Mann M, Stenmark H, Dikic I.
Nature. 2006 Jan 12;439(7073):204-7. Epub 2005 Nov 23.
Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6.
Hacker H, Redecke V, Blagoev B, Kratchmarova I, Hsu LC, Wang GG, Kamps MP, Raz E, Wagner H, Hacker G, Mann M, Karin M.
J Proteome Res. 2006 Jan;5(1):64-75.
Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
Foster LJ, Rudich A, Talior I, Patel N, Huang X, Furtado LM, Bilan PJ, Mann M, Klip A.
Genes Dev. 2006 Jan 1;20(1):113-24.
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Kruse T, Blagoev B, Lobner-Olesen A, Wachi M, Sasaki K, Iwai N, Mann M, Gerdes K.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D218-20.
NOPdb: Nucleolar Proteome Database.
Leung AK, Trinkle-Mulcahy L, Lam YW, Andersen JS, Mann M, Lamond AI.
Comp Biochem Physiol B Biochem Mol Biol. 2006 Feb;143(2):160-70. Epub 2006 Jan 3
Amino acid sequences and phosphorylation sites of emu and rhea eggshell C-type lectin-like proteins
Mann K, Siedler F.
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Mol Cell Proteomics. 2005 Dec;4(12):2010-21. Epub 2005 Oct 24
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
Olsen JV, de Godoy LM, Li G, Macek B, Mortensen P, Pesch R, Makarov A, Lange O, Horning S, Mann M.
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