Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints. Zielinska DF, Gnad F, Wisniewski JR, Mann M. Cell. 2010 May 28;141(5):897-907.
Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins. Zielinska DF, Gnad F, Jedrusik-Bode M, Wisniewski JR, Mann M.J Proteome Res. 2009 Aug;8(8):4039-49
Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology. Wisniewski JR, Nagaraj N, Zougman A, Gnad F, Mann M. J Proteome Res. 2010 Jun 4;9(6):3280-9
Global analysis of the yeast osmotic stress response by quantitative proteomics. Soufi B, Kelstrup CD, Stoehr G, Fröhlich F, Walther TC, Olsen JV. Mol Biosyst. 2009 Nov;5(11):1337-46.
Clinical sample analysis
Super-SILAC mix for quantitative proteomics of human tumor tissue. Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M. Nat Methods. 2010 May;7(5):383-5.
Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome. Wisniewski JR, Zougman A, Mann M. J Proteome Res. 2009 Dec;8(12):5674-8
Analysis of formalin fixed and paraffin embedded tissue
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. Ostasiewicz P, Zielinska DF, Mann M, Wisniewski JR. J Proteome Res. 2010 Jul 2;9(7):3688-700.