Tomography Toolbox

tom_center_detail

centers a detail manually by image/beamshift or stage movement

Syntax

[v,ref_image,break_at_tracking,reference]=tom_center_detail(State,COMS)

Input:

State	:state (structure), to set microscope in a certain mode
COMS	:structure including the interface to the microcoscope (ActiveX Server)
to check the organisation of the structures see tom_make_acquisition_structure and tom_make_all_Coms
Output
reference	:structure including the reference data ...check tom_make_acquisition structure
break_at_tracking	:flag to stop the tiltseries
ref_image	:ref_image

Description

tom_center_detail compensates the movement of the stage while tilting. The correction can be done ether by image/beamshift or stage movement.It's possible to click on a detail, wihch is shifted to the middle (center detail button) or to click one detail (on a centered image) and keep that detail a the same position. The coordinates of clicked detail(marker) are stored in the EM-header file for further processing steps.

Examples

See Also

tom_acquire_tracking, tom_center_detail_xcorr

tom_calc_tiltangles

tom_center_detail_xcorr