Journal Publications


  • J.B. Woehrstein*, M.T. Strauss*, L.L. Ong, B. Wei, D.Y. Zhang, R. Jungmann°, P. Yin°
    Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA
    Science Advances (2017). in press
    (* Authors contributed equally, ° Co-corresponding authors)

  • J. Schnitzbauer*, M.T. Strauss*, T. Schlichthaerle, F. Schueder, R. Jungmann
    Super-Resolution Microscopy with DNA-PAINT
    Nature Protocols (2017). 12: 1198-1228
    (* Authors contributed equally)

  • F. Schueder, M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann
    Universal Super-Resolution Multiplexing by DNA Exchange
    Angewandte Chemie International Edition (2017). 56: 4052-4055

  • S. S. Agasti*, Y. Wang*, F. Schueder, A. Sukumar, R. Jungmann°, P. Yin°
    DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging
    Chemical Science (2017). 8: 3080–3091
    (* Authors contributed equally, ° Co-corresponding authors)


  • M. Dai, R. Jungmann, P. Yin
    Optical imaging of individual biomolecules in densely packed clusters
    Nature Nanotechnology (2016). 11(9): 798–807

  • R. Jungmann
    Overcoming obstacles in localization microscopy
    Nature Methods (2016). 13: 301-302

  • R. Jungmann*, M.S. Avendaño*, M. Dai, J.B. Woehrstein, S. S. Agasti, Z. Feiger, A. Rodal, P. Yin
    Quantitative Super-Resolution Imaging with qPAINT
    Nature Methods (2016). 13: 439-442
    (* Authors contributed equally)

  • T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, R. Jungmann
    DNA nanotechnology and fluorescence applications
    Current Opinion in Biotechnology (2016). 39: 41-47


  • T. Raschle, C. Lin, R. Jungmann, W.M. Shih, G. Wagner
    Controlled co-reconstitution of multiple membrane proteins in lipid bilayer nanodiscs using DNA as a scaffold
    ACS Chemical Biology (2015). 10(11): 2448-54

  • J.B. Knudsen. L. Liu, A.L.B. Kodal, M. Madsen, Q. Li, J. Song, J.B. Woehrstein, S.F.J. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W.M. Shih. R. Jungmann, M. Dong°, K.V. Gothelf°
    Routing of individual polymers in designed patterns
    Nature Nanotechnology (2015). 11: 892-898
    (° Co-corresponding authors)

  • M.B. Scheible, L.L. Ong, J.B. Woehstein, R. Jungmann, P. Yin, and F.C. Simmel
    A compact DNA cube with side length 10 nm
    Small (2015). 11(39): 5200-5

  • B. Beliveau, A. Boettiger, M. Avendaño, R. Jungmann, R. McCole, E. Joyce, C. Kim-Kiselak, F. Bantignies, C. Fonseka, J. Erceg, M. Hannan, H. Hoang, D. Colognori, J. Lee, W. Shih, P. Yin, X. Zhuang, and C. Wu
    Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
    Nature Communications (2015). 6: 1-13





  • E. Franco, E. Friedrichs, J. Kim, R. Jungmann, R. Murray, E. Winfree, and F. C. Simmel
Timing molecular motion and production with a synthetic transcriptional clock

    Proceedings of the National Academy of Science U.S.A. (2011). 108: E784-E793

  • R. Jungmann, M. Scheible, A. Kuzyk, G. Pardatscher, C. E. Castro, and F. C. Simmel

    DNA origami-based nanoribbons: assembly, length distribution, and twist
    Nanotechnology (2011). 22: 275301

  • R. Jungmann, M. E. Szabo, G. Schitter, R. Tang, D. Vashishth, P. K. Hansma, and P. J. Thurner

    Local Strain and Damage Mapping in Single Trabeculae during Three-Point Bending Tests

    Journal of the Mechanical Behavior of Biomedical Materials (2011). 4(4): 523-534


  • R. Jungmann*, C. Steinhauer*, M. Scheible, A. Kuzyk, P. Tinnefeld°, and F. C. Simmel°
Single-molecule kinetics and super-resolution microscopy by fluorescence imaging of transient binding on DNA origami

    Nano Letters (2010). 10(11): 4756-4761

    (* Authors contributed equally, ° Co-corresponding authors)

  • D. Hönig, J. DeRouchey, R. Jungmann, C. Koch, C. Plank, and J. O. Rädler

    Biophysical Characterization of Copolymer-Protected Gene Vectors

    Biomacromolecules (2010). 11(7): 1802-1809

  • V. Tejedor, O. Bénichou, R. Voituriez, R. Jungmann, F. C. Simmel, C. Selhuber-Unkel, L.B. Oddershede, and R. Metzler

    Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method

    Biophysical Journal (2010). 98(7): 1364-1372


  • C. Steinhauer*, R. Jungmann*, T. Sobey, F. C. Simmel°, and P. Tinnefeld°

    DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy

    Angewandte Chemie International Edition (2009). 48(47): 8870-8873

    (* Authors contributed equally, ° Co-corresponding authors)

  • P. J. Thurner, B. Erickson, P. Turner, R. Jungmann, J. Lelujian, A. Proctor, J. C. Weaver, G. Schitter, D. E. Morse, and P. K. Hansma
The effect of NaF in vitro on the mechanical and material properties of trabecular and cortical bone

    Advanced Materials (2009). 21(4): 451-457


  • R. Jungmann, T. Liedl, T. L. Sobey, W. Shih, and F. C. Simmel
Isothermal assembly of DNA origami structures using denaturing agents
    Journal of the American Chemical Society (2008). 130: 10062-10063

  • R. Jungmann, S. Renner, and F. C. Simmel
From DNA nanotechnology to synthetic biology
    HFSP Journal (2008). 2: 99-109

  • P. K. Hansma, P. Turner, B. Drake, E. Yurtsev, A. Proctor, P. Mathews, J. Lelujian, C. Randall, J. Adams, R. Jungmann, F. Garza-de-Leon, G. Fantner, H. Mkrtchyan, M. Pontin, A. Weaver, M. B. Brown, N. Sahar, R. Rossello, and D. Kohn

    The bone diagnostic instrument II: Indentation distance increase
    Review of Scientific Instruments (2008). 79(6): 064303-8


  • M. E. Lauer, R. Jungmann, J. H. Kindt, S. Magonov, J. H. Fuhrhop, E. Oroudjev, and H. G. Hansma

    Formation and Healing of Micrometer-Sized Channel Networks on Highly Mobile Au(111) Surfaces
    Langmuir (2007). 23(10): 5459-5465

  • P. J. Thurner, B. Erickson, R. Jungmann, Z. Schriock, J. C. Weaver, G. E. Fantner, G. Schitter, D. E. Morse, and P. K. Hansma
High-speed photography of compressed human trabecular bone correlates whitening to microscopic damage

    Engineering Fracture Mechanics (2007). 74(12): 1928-1941

Book Chapters

  • M. Scheible, R. Jungmann, and F. C. Simmel
Assembly and microscopic characterization of DNA origami structures
Advances in Experimental Medicine and Biology (2012). 733: 87–96

  • C. Steinhauer, C. Forthmann, R. Jungmann, J. Vogelsang, F. C. Simmel, and P. Tinnefeld

    Nanoscopy using localization and temporal separation of fluorescence from single molecules

    NATO Science for Peace and Security Series B: Physics and Biophysics (2011). Part 1, 87-106

  • P. J. Thurner, E. Oroudjev, R. Jungmann, C. Kreutz, J. H. Kindt, G. Schitter, T. O. Okouneva, M. E. Lauer, G. E. Fantner, H. G. Hansma, and P. K. Hansma

    Imaging of Bone Ultrastructure using Atomic Force Microscopy
    Modern Research and Educational Topics in Microscopy 3rd Edition (2007). Vol. 1, 37-48 
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